Analysis of interatomic Contacts of Structural Units in PDB entry:
4MUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MUP entry

There are 3 chains in PDB entry 4MUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6VAL 289
B
 LEU 4VAL 289
C
 ALA 12ILE 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4MUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 61Right-handed alpha
Helix 2
2
A
70 74Right-handed 310
Helix 3
3
A
77 88Right-handed alpha
Helix 4
4
A
102 112Right-handed alpha
Helix 5
5
A
128 130Right-handed 310
Helix 6
6
A
131 142Right-handed alpha
Helix 7
7
A
151 153Right-handed 310
Helix 8
8
A
154 164Right-handed alpha
Helix 9
9
A
173 177Right-handed 310
Helix 10
10
A
185 198Right-handed alpha
Helix 11
11
A
206 210Right-handed 310
Helix 12
12
A
217 231Right-handed alpha
Helix 13
13
A
248 252Right-handed 310
Helix 14
14
A
254 264Right-handed alpha
Helix 15
15
A
268 277Right-handed alpha
Helix 16
16
A
277 285Right-handed alpha
Helix 17
17
B
49 61Right-handed alpha
Helix 18
18
B
70 74Right-handed 310
Helix 19
19
B
77 88Right-handed alpha
Helix 20
20
B
102 112Right-handed alpha
Helix 21
21
B
128 130Right-handed 310
Helix 22
22
B
131 142Right-handed alpha
Helix 23
23
B
151 153Right-handed 310
Helix 24
24
B
154 164Right-handed alpha
Helix 25
25
B
173 177Right-handed 310
Helix 26
26
B
185 198Right-handed alpha
Helix 27
27
B
206 210Right-handed 310
Helix 28
28
B
217 231Right-handed alpha
Helix 29
29
B
248 252Right-handed 310
Helix 30
30
B
254 264Right-handed alpha
Helix 31
31
B
268 277Right-handed alpha
Helix 32
32
B
277 285Right-handed alpha
Helix 33
33
C
49 61Right-handed alpha
Helix 34
34
C
70 74Right-handed 310
Helix 35
35
C
77 88Right-handed alpha
Helix 36
36
C
102 112Right-handed alpha
Helix 37
37
C
128 130Right-handed 310
Helix 38
38
C
131 142Right-handed alpha
Helix 39
39
C
151 153Right-handed 310
Helix 40
40
C
154 164Right-handed alpha
Helix 41
41
C
173 177Right-handed 310
Helix 42
42
C
185 197Right-handed alpha
Helix 43
43
C
206 210Right-handed 310
Helix 44
44
C
217 231Right-handed alpha
Helix 45
45
C
254 264Right-handed alpha
Helix 46
46
C
268 277Right-handed alpha
Helix 47
47
C
277 285Right-handed alpha
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There are 3 sheets in PDB entry 4MUP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
64 68parallel
Strand 3
A
91 95parallel
Strand 4
A
114 120parallel
Strand 5
A
145 149parallel
Strand 6
A
168 171parallel
Strand 7
A
200 204parallel
Strand 8
A
235 237parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
64 68parallel
Strand 3
B
91 95parallel
Strand 4
B
114 120parallel
Strand 5
B
145 149parallel
Strand 6
B
168 171parallel
Strand 7
B
200 204parallel
Strand 8
B
235 237parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
C
64 68parallel
Strand 3
C
91 95parallel
Strand 4
C
114 120parallel
Strand 5
C
145 149parallel
Strand 6
C
168 171parallel
Strand 7
C
200 204parallel
Strand 8
C
235 237parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il