Analysis of interatomic Contacts of Structural Units in PDB entry:
4MVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4MVD entry

There are 8 chains in PDB entry 4MVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 40	PRO 295
A	GLY 40	PRO 295
D	GLY 40	PRO 295
C	GLY 40	PRO 295
F	GLY 40	PRO 295
E	GLY 40	PRO 295
H	GLY 40	PRO 295
G	GLY 40	PRO 295

There are 68 helices in PDB entry 4MVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	63	69	Right-handed alpha
Helix 2	2	B	89	102	Right-handed alpha
Helix 3	3	B	114	122	Right-handed alpha
Helix 4	4	B	128	138	Right-handed alpha
Helix 5	5	B	154	161	Right-handed alpha
Helix 6	6	B	182	188	Right-handed alpha
Helix 7	7	B	201	274	Right-handed alpha
Helix 8	8	B	279	292	Right-handed alpha
Helix 9	9	A	63	69	Right-handed alpha
Helix 10	10	A	89	102	Right-handed alpha
Helix 11	11	A	114	122	Right-handed alpha
Helix 12	12	A	128	138	Right-handed alpha
Helix 13	13	A	154	161	Right-handed alpha
Helix 14	14	A	182	188	Right-handed alpha
Helix 15	15	A	201	223	Right-handed alpha
Helix 16	16	A	227	275	Right-handed alpha
Helix 17	17	A	281	292	Right-handed alpha
Helix 18	18	D	63	69	Right-handed alpha
Helix 19	19	D	89	102	Right-handed alpha
Helix 20	20	D	114	122	Right-handed alpha
Helix 21	21	D	128	138	Right-handed alpha
Helix 22	22	D	154	161	Right-handed alpha
Helix 23	23	D	182	188	Right-handed alpha
Helix 24	24	D	201	274	Right-handed alpha
Helix 25	25	D	279	292	Right-handed alpha
Helix 26	26	C	63	69	Right-handed alpha
Helix 27	27	C	89	102	Right-handed alpha
Helix 28	28	C	114	122	Right-handed alpha
Helix 29	29	C	128	138	Right-handed alpha
Helix 30	30	C	154	161	Right-handed alpha
Helix 31	31	C	182	188	Right-handed alpha
Helix 32	32	C	201	223	Right-handed alpha
Helix 33	33	C	226	275	Right-handed alpha
Helix 34	34	C	281	292	Right-handed alpha
Helix 35	35	F	63	69	Right-handed alpha
Helix 36	36	F	89	102	Right-handed alpha
Helix 37	37	F	114	122	Right-handed alpha
Helix 38	38	F	128	138	Right-handed alpha
Helix 39	39	F	154	161	Right-handed alpha
Helix 40	40	F	182	188	Right-handed alpha
Helix 41	41	F	201	274	Right-handed alpha
Helix 42	42	F	279	292	Right-handed alpha
Helix 43	43	E	63	69	Right-handed alpha
Helix 44	44	E	89	102	Right-handed alpha
Helix 45	45	E	114	122	Right-handed alpha
Helix 46	46	E	128	138	Right-handed alpha
Helix 47	47	E	154	161	Right-handed alpha
Helix 48	48	E	182	188	Right-handed alpha
Helix 49	49	E	201	223	Right-handed alpha
Helix 50	50	E	227	275	Right-handed alpha
Helix 51	51	E	281	292	Right-handed alpha
Helix 52	52	H	63	69	Right-handed alpha
Helix 53	53	H	89	102	Right-handed alpha
Helix 54	54	H	114	122	Right-handed alpha
Helix 55	55	H	128	138	Right-handed alpha
Helix 56	56	H	154	161	Right-handed alpha
Helix 57	57	H	182	188	Right-handed alpha
Helix 58	58	H	201	274	Right-handed alpha
Helix 59	59	H	279	292	Right-handed alpha
Helix 60	60	G	63	69	Right-handed alpha
Helix 61	61	G	89	102	Right-handed alpha
Helix 62	62	G	114	122	Right-handed alpha
Helix 63	63	G	128	138	Right-handed alpha
Helix 64	64	G	154	161	Right-handed alpha
Helix 65	65	G	182	188	Right-handed alpha
Helix 66	66	G	201	223	Right-handed alpha
Helix 67	67	G	227	275	Right-handed alpha
Helix 68	68	G	281	292	Right-handed alpha

There are 8 sheets in PDB entry 4MVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	149	first strand
Strand 2	B	106	113	parallel
Strand 3	B	77	83	parallel
Strand 4	B	165	169	parallel
Strand 5	B	191	194	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	149	first strand
Strand 2	A	106	113	parallel
Strand 3	A	77	83	parallel
Strand 4	A	165	169	parallel
Strand 5	A	191	194	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	149	first strand
Strand 2	D	106	113	parallel
Strand 3	D	77	83	parallel
Strand 4	D	165	169	parallel
Strand 5	D	191	194	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	149	first strand
Strand 2	C	106	113	parallel
Strand 3	C	77	83	parallel
Strand 4	C	165	169	parallel
Strand 5	C	191	194	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	149	first strand
Strand 2	F	106	113	parallel
Strand 3	F	77	83	parallel
Strand 4	F	165	169	parallel
Strand 5	F	191	194	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	149	first strand
Strand 2	E	106	113	parallel
Strand 3	E	77	83	parallel
Strand 4	E	165	169	parallel
Strand 5	E	191	194	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	149	first strand
Strand 2	H	106	113	parallel
Strand 3	H	77	83	parallel
Strand 4	H	165	169	parallel
Strand 5	H	191	194	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	149	first strand
Strand 2	G	106	113	parallel
Strand 3	G	77	83	parallel
Strand 4	G	165	169	parallel
Strand 5	G	191	194	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4MVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
4MVD