Analysis of interatomic Contacts of Structural Units in PDB entry:
4MY1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4MY1 entry

There are 4 chains in PDB entry 4MY1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -2	SER 486
B	SER -2	SER 486
C	TYR -5	SER 486
D	ASN -1	LEU 451

There are122 helices in PDB entry 4MY1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	-1	4	Right-handed alpha
Helix 2	2	A	12	14	Right-handed 310
Helix 3	3	A	26	30	Right-handed 310
Helix 4	4	A	56	66	Right-handed alpha
Helix 5	5	A	77	90	Right-handed alpha
Helix 6	6	A	232	243	Right-handed alpha
Helix 7	7	A	257	271	Right-handed alpha
Helix 8	8	A	283	294	Right-handed alpha
Helix 9	9	A	309	315	Right-handed alpha
Helix 10	10	A	319	333	Right-handed alpha
Helix 11	11	A	346	356	Right-handed alpha
Helix 12	12	A	364	369	Right-handed alpha
Helix 13	13	A	393	398	Right-handed alpha
Helix 14	14	A	427	447	Right-handed alpha
Helix 15	15	A	450	458	Right-handed alpha
Helix 16	16	A	464	472	Right-handed alpha
Helix 17	17	B	-1	4	Right-handed alpha
Helix 18	18	B	12	14	Right-handed 310
Helix 19	19	B	56	66	Right-handed alpha
Helix 20	20	B	77	91	Right-handed alpha
Helix 21	21	B	232	243	Right-handed alpha
Helix 22	22	B	257	271	Right-handed alpha
Helix 23	23	B	283	292	Right-handed alpha
Helix 24	24	B	309	314	Right-handed alpha
Helix 25	25	B	319	334	Right-handed alpha
Helix 26	26	B	346	357	Right-handed alpha
Helix 27	27	B	364	369	Right-handed alpha
Helix 28	28	B	393	401	Right-handed alpha
Helix 29	29	B	427	447	Right-handed alpha
Helix 30	30	B	450	458	Right-handed alpha
Helix 31	31	B	464	472	Right-handed alpha
Helix 32	32	C	-3	4	Right-handed alpha
Helix 33	33	C	12	14	Right-handed 310
Helix 34	34	C	56	66	Right-handed alpha
Helix 35	35	C	77	90	Right-handed alpha
Helix 36	36	C	232	243	Right-handed alpha
Helix 37	37	C	257	271	Right-handed alpha
Helix 38	38	C	283	294	Right-handed alpha
Helix 39	39	C	309	315	Right-handed alpha
Helix 40	40	C	319	333	Right-handed alpha
Helix 41	41	C	346	356	Right-handed alpha
Helix 42	42	C	364	369	Right-handed alpha
Helix 43	43	C	393	399	Right-handed alpha
Helix 44	44	C	427	446	Right-handed alpha
Helix 45	45	C	450	458	Right-handed alpha
Helix 46	46	C	464	471	Right-handed alpha
Helix 47	47	D	0	5	Right-handed alpha
Helix 48	48	D	12	14	Right-handed 310
Helix 49	49	D	26	30	Right-handed 310
Helix 50	50	D	56	65	Right-handed alpha
Helix 51	51	D	77	90	Right-handed alpha
Helix 52	52	D	232	243	Right-handed alpha
Helix 53	53	D	257	271	Right-handed alpha
Helix 54	54	D	283	293	Right-handed alpha
Helix 55	55	D	309	314	Right-handed alpha
Helix 56	56	D	319	334	Right-handed alpha
Helix 57	57	D	346	356	Right-handed alpha
Helix 58	58	D	364	369	Right-handed alpha
Helix 59	59	D	393	399	Right-handed alpha
Helix 60	60	D	427	446	Right-handed alpha
Helix 61	61	D	450	458	Right-handed alpha
Helix 62	62	D	464	472	Right-handed alpha
Helix 63	63	E	-1	4	Right-handed alpha
Helix 64	64	E	12	14	Right-handed 310
Helix 65	65	E	56	67	Right-handed alpha
Helix 66	66	E	77	91	Right-handed alpha
Helix 67	67	E	232	242	Right-handed alpha
Helix 68	68	E	257	271	Right-handed alpha
Helix 69	69	E	283	293	Right-handed alpha
Helix 70	70	E	309	314	Right-handed alpha
Helix 71	71	E	319	332	Right-handed alpha
Helix 72	72	E	333	335	Right-handed 310
Helix 73	73	E	346	356	Right-handed alpha
Helix 74	74	E	393	397	Right-handed 310
Helix 75	75	E	427	446	Right-handed alpha
Helix 76	76	E	450	458	Right-handed alpha
Helix 77	77	E	464	472	Right-handed alpha
Helix 78	78	F	-4	1	Right-handed alpha
Helix 79	79	F	2	4	Right-handed 310
Helix 80	80	F	12	14	Right-handed 310
Helix 81	81	F	26	30	Right-handed 310
Helix 82	82	F	56	66	Right-handed alpha
Helix 83	83	F	77	90	Right-handed alpha
Helix 84	84	F	232	243	Right-handed alpha
Helix 85	85	F	257	271	Right-handed alpha
Helix 86	86	F	283	293	Right-handed alpha
Helix 87	87	F	309	315	Right-handed alpha
Helix 88	88	F	319	334	Right-handed alpha
Helix 89	89	F	346	355	Right-handed alpha
Helix 90	90	F	393	398	Right-handed alpha
Helix 91	91	F	427	447	Right-handed alpha
Helix 92	92	F	450	458	Right-handed alpha
Helix 93	93	F	464	472	Right-handed alpha
Helix 94	94	G	12	14	Right-handed 310
Helix 95	95	G	56	66	Right-handed alpha
Helix 96	96	G	77	90	Right-handed alpha
Helix 97	97	G	232	243	Right-handed alpha
Helix 98	98	G	257	271	Right-handed alpha
Helix 99	99	G	283	292	Right-handed alpha
Helix 100	100	G	309	314	Right-handed alpha
Helix 101	101	G	319	332	Right-handed alpha
Helix 102	102	G	346	356	Right-handed alpha
Helix 103	103	G	364	369	Right-handed alpha
Helix 104	104	G	393	398	Right-handed alpha
Helix 105	105	G	427	447	Right-handed alpha
Helix 106	106	G	450	458	Right-handed alpha
Helix 107	107	G	464	472	Right-handed alpha
Helix 108	108	H	-1	4	Right-handed alpha
Helix 109	109	H	12	14	Right-handed 310
Helix 110	110	H	56	66	Right-handed alpha
Helix 111	111	H	77	90	Right-handed alpha
Helix 112	112	H	232	243	Right-handed alpha
Helix 113	113	H	257	271	Right-handed alpha
Helix 114	114	H	283	294	Right-handed alpha
Helix 115	115	H	309	314	Right-handed alpha
Helix 116	116	H	319	334	Right-handed alpha
Helix 117	117	H	346	356	Right-handed alpha
Helix 118	118	H	364	369	Right-handed alpha
Helix 119	119	H	393	398	Right-handed alpha
Helix 120	120	H	427	447	Right-handed alpha
Helix 121	121	H	450	458	Right-handed alpha
Helix 122	122	H	464	471	Right-handed alpha

There are 32 sheets in PDB entry 4MY1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	C	460	462	parallel
Strand 3	C	16	18	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	460	462	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	41	42	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	69	72	parallel
Strand 3	A	224	227	parallel
Strand 4	A	247	251	parallel
Strand 5	A	275	281	parallel
Strand 6	A	297	300	parallel
Strand 7	A	338	341	parallel
Strand 8	A	360	363	parallel
Strand 9	A	46	48	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	419	423	anti-parallel
Strand 4	C	477	478	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	B	419	423	anti-parallel
Strand 3	B	383	389	anti-parallel
Strand 4	B	378	380	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	460	463	anti-parallel
Strand 3	D	9	10	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	41	42	anti-parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	69	72	parallel
Strand 3	B	224	227	parallel
Strand 4	B	247	250	parallel
Strand 5	B	276	281	parallel
Strand 6	B	297	300	parallel
Strand 7	B	338	341	parallel
Strand 8	B	360	363	parallel
Strand 9	B	46	48	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	478	first strand
Strand 2	D	419	423	anti-parallel
Strand 3	D	383	389	anti-parallel
Strand 4	D	378	380	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	D	460	462	parallel
Strand 3	D	16	18	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	40	42	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	69	72	parallel
Strand 3	C	224	227	parallel
Strand 4	C	247	251	parallel
Strand 5	C	276	281	parallel
Strand 6	C	297	300	parallel
Strand 7	C	338	341	parallel
Strand 8	C	360	363	parallel
Strand 9	C	46	48	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	380	first strand
Strand 2	C	383	389	anti-parallel
Strand 3	C	419	423	anti-parallel
Strand 4	D	477	478	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	41	42	anti-parallel

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There are 9 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	69	72	parallel
Strand 3	D	224	228	parallel
Strand 4	D	247	251	parallel
Strand 5	D	275	281	parallel
Strand 6	D	297	300	parallel
Strand 7	D	338	341	parallel
Strand 8	D	360	363	parallel
Strand 9	D	46	48	parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	460	462	anti-parallel
Strand 3	F	8	9	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	41	42	anti-parallel

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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	48	first strand
Strand 2	E	69	72	parallel
Strand 3	E	224	227	parallel
Strand 4	E	247	251	parallel
Strand 5	E	275	281	parallel
Strand 6	E	297	300	parallel
Strand 7	E	338	341	parallel
Strand 8	E	360	363	parallel
Strand 9	E	46	48	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	380	first strand
Strand 2	E	383	389	anti-parallel
Strand 3	E	419	423	anti-parallel
Strand 4	G	477	480	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	477	480	first strand
Strand 2	F	419	423	anti-parallel
Strand 3	F	383	389	anti-parallel
Strand 4	F	378	380	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	460	462	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	37	first strand
Strand 2	F	40	42	anti-parallel

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There are 9 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	69	72	parallel
Strand 3	F	224	227	parallel
Strand 4	F	247	250	parallel
Strand 5	F	275	281	parallel
Strand 6	F	297	300	parallel
Strand 7	F	338	341	parallel
Strand 8	F	360	363	parallel
Strand 9	F	46	48	parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	480	first strand
Strand 2	H	419	423	anti-parallel
Strand 3	H	383	389	anti-parallel
Strand 4	H	378	380	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	H	460	462	parallel
Strand 3	H	16	18	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	460	462	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	35	first strand
Strand 2	G	41	42	anti-parallel

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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	48	first strand
Strand 2	G	69	72	parallel
Strand 3	G	224	228	parallel
Strand 4	G	247	251	parallel
Strand 5	G	276	281	parallel
Strand 6	G	297	300	parallel
Strand 7	G	338	341	parallel
Strand 8	G	360	363	parallel
Strand 9	G	46	48	parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	378	380	first strand
Strand 2	G	383	389	anti-parallel
Strand 3	G	419	423	anti-parallel
Strand 4	H	477	478	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	37	first strand
Strand 2	H	40	42	anti-parallel

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There are 9 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	48	first strand
Strand 2	H	69	72	parallel
Strand 3	H	224	227	parallel
Strand 4	H	247	251	parallel
Strand 5	H	275	281	parallel
Strand 6	H	297	300	parallel
Strand 7	H	338	341	parallel
Strand 8	H	360	363	parallel
Strand 9	H	46	48	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4MY1

Analysis of interatomic Contacts of Structural Units in PDB entry:
4MY1