Analysis of interatomic Contacts of Structural Units in PDB entry:
4MY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MY5 entry

There are 4 chains in PDB entry 4MY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 390
D
 ASP 2GLU 387
B
 MET 1TYR 389
C
 MET 1GLN 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 4MY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed 310
Helix 2
2
A
17 26Right-handed alpha
Helix 3
3
A
45 59Right-handed alpha
Helix 4
4
A
69 85Right-handed alpha
Helix 5
5
A
99 112Right-handed alpha
Helix 6
6
A
128 136Right-handed alpha
Helix 7
7
A
144 148Right-handed 310
Helix 8
8
A
152 163Right-handed alpha
Helix 9
9
A
184 196Right-handed alpha
Helix 10
10
A
220 225Right-handed alpha
Helix 11
11
A
252 264Right-handed alpha
Helix 12
12
A
271 285Right-handed alpha
Helix 13
13
A
288 310Right-handed alpha
Helix 14
14
A
329 333Right-handed 310
Helix 15
15
A
334 347Right-handed alpha
Helix 16
16
A
354 356Right-handed 310
Helix 17
17
A
371 388Right-handed alpha
Helix 18
18
D
8 14Right-handed 310
Helix 19
19
D
17 26Right-handed alpha
Helix 20
20
D
45 57Right-handed alpha
Helix 21
21
D
69 85Right-handed alpha
Helix 22
22
D
99 112Right-handed alpha
Helix 23
23
D
127 135Right-handed alpha
Helix 24
24
D
145 148Right-handed 310
Helix 25
25
D
152 164Right-handed alpha
Helix 26
26
D
184 196Right-handed alpha
Helix 27
27
D
220 224Right-handed 310
Helix 28
28
D
252 260Right-handed alpha
Helix 29
29
D
261 266Right-handed 310
Helix 30
30
D
271 283Right-handed alpha
Helix 31
31
D
288 309Right-handed alpha
Helix 32
32
D
329 333Right-handed 310
Helix 33
33
D
334 347Right-handed alpha
Helix 34
34
D
354 361Right-handed 310
Helix 35
35
D
371 386Right-handed alpha
Helix 36
36
B
2 6Right-handed 310
Helix 37
37
B
8 13Right-handed 310
Helix 38
38
B
17 26Right-handed alpha
Helix 39
39
B
45 57Right-handed alpha
Helix 40
40
B
69 85Right-handed alpha
Helix 41
41
B
99 112Right-handed alpha
Helix 42
42
B
127 135Right-handed alpha
Helix 43
43
B
145 148Right-handed 310
Helix 44
44
B
152 164Right-handed alpha
Helix 45
45
B
184 196Right-handed alpha
Helix 46
46
B
220 224Right-handed 310
Helix 47
47
B
252 260Right-handed alpha
Helix 48
48
B
261 266Right-handed 310
Helix 49
49
B
271 283Right-handed alpha
Helix 50
50
B
288 310Right-handed alpha
Helix 51
51
B
329 333Right-handed 310
Helix 52
52
B
334 347Right-handed alpha
Helix 53
53
B
354 361Right-handed 310
Helix 54
54
B
371 388Right-handed alpha
Helix 55
55
C
8 13Right-handed 310
Helix 56
56
C
17 26Right-handed alpha
Helix 57
57
C
45 59Right-handed alpha
Helix 58
58
C
69 85Right-handed alpha
Helix 59
59
C
99 112Right-handed alpha
Helix 60
60
C
127 135Right-handed alpha
Helix 61
61
C
144 148Right-handed 310
Helix 62
62
C
152 163Right-handed alpha
Helix 63
63
C
184 196Right-handed alpha
Helix 64
64
C
220 225Right-handed alpha
Helix 65
65
C
252 267Right-handed alpha
Helix 66
66
C
271 285Right-handed alpha
Helix 67
67
C
288 310Right-handed alpha
Helix 68
68
C
329 333Right-handed 310
Helix 69
69
C
334 347Right-handed alpha
Helix 70
70
C
354 356Right-handed 310
Helix 71
71
C
371 387Right-handed alpha
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There are 12 sheets in PDB entry 4MY5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
348 349parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
247 250anti-parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
201 205parallel
Strand 5
A
167 173parallel
Strand 6
A
117 121parallel
Strand 7
A
138 142parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
363 367anti-parallel
Strand 4
A
351 352anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 34first strand
Strand 2
D
348 349parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 97first strand
Strand 2
D
247 250anti-parallel
Strand 3
D
229 234anti-parallel
Strand 4
D
201 205parallel
Strand 5
D
167 173parallel
Strand 6
D
117 122parallel
Strand 7
D
138 143parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
313 314first strand
Strand 2
D
322 326anti-parallel
Strand 3
D
363 367anti-parallel
Strand 4
D
351 352anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
348 349parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
247 250anti-parallel
Strand 3
B
229 234anti-parallel
Strand 4
B
201 205parallel
Strand 5
B
167 173parallel
Strand 6
B
117 122parallel
Strand 7
B
138 143parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
363 367anti-parallel
Strand 4
B
351 352anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
348 349parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 97first strand
Strand 2
C
247 250anti-parallel
Strand 3
C
229 234anti-parallel
Strand 4
C
201 205parallel
Strand 5
C
167 173parallel
Strand 6
C
117 121parallel
Strand 7
C
138 142parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 314first strand
Strand 2
C
322 326anti-parallel
Strand 3
C
363 367anti-parallel
Strand 4
C
351 352anti-parallel
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