Analysis of interatomic Contacts of Structural Units in PDB entry:
4MYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MYA entry

There are 2 chains in PDB entry 4MYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1TYR 485
B
 ASN -1TYR 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4MYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 4Right-handed alpha
Helix 2
2
A
12 14Right-handed 310
Helix 3
3
A
26 30Right-handed 310
Helix 4
4
A
56 66Right-handed alpha
Helix 5
5
A
77 90Right-handed alpha
Helix 6
6
A
232 243Right-handed alpha
Helix 7
7
A
257 271Right-handed alpha
Helix 8
8
A
283 294Right-handed alpha
Helix 9
9
A
309 314Right-handed alpha
Helix 10
10
A
319 333Right-handed alpha
Helix 11
11
A
346 356Right-handed alpha
Helix 12
12
A
393 399Right-handed alpha
Helix 13
13
A
427 447Right-handed alpha
Helix 14
14
A
450 458Right-handed alpha
Helix 15
15
A
464 471Right-handed alpha
Helix 16
16
B
0 4Right-handed alpha
Helix 17
17
B
12 14Right-handed 310
Helix 18
18
B
26 30Right-handed 310
Helix 19
19
B
56 66Right-handed alpha
Helix 20
20
B
77 90Right-handed alpha
Helix 21
21
B
232 243Right-handed alpha
Helix 22
22
B
257 271Right-handed alpha
Helix 23
23
B
283 294Right-handed alpha
Helix 24
24
B
309 314Right-handed alpha
Helix 25
25
B
319 333Right-handed alpha
Helix 26
26
B
346 356Right-handed alpha
Helix 27
27
B
393 399Right-handed alpha
Helix 28
28
B
427 447Right-handed alpha
Helix 29
29
B
450 458Right-handed alpha
Helix 30
30
B
464 471Right-handed alpha
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There are 8 sheets in PDB entry 4MYA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
460 462anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
40 42anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
69 72parallel
Strand 3
A
224 227parallel
Strand 4
A
247 251parallel
Strand 5
A
275 281parallel
Strand 6
A
297 300parallel
Strand 7
A
338 341parallel
Strand 8
A
360 363parallel
Strand 9
A
46 48parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
383 389anti-parallel
Strand 3
A
419 423anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
460 462anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
40 42anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
69 72parallel
Strand 3
B
224 227parallel
Strand 4
B
247 251parallel
Strand 5
B
275 281parallel
Strand 6
B
297 300parallel
Strand 7
B
338 341parallel
Strand 8
B
360 363parallel
Strand 9
B
46 48parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 379first strand
Strand 2
B
384 389anti-parallel
Strand 3
B
419 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il