Analysis of interatomic Contacts of Structural Units in PDB entry:
4MYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MYC entry

There are 3 chains in PDB entry 4MYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 98GLN 695
C
 TYR 98GLN 695
B
 TYR 98GLN 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 4MYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
105 108Right-handed 310
Helix 2
2
A
109 127Right-handed alpha
Helix 3
3
A
127 138Right-handed alpha
Helix 4
4
A
151 199Right-handed alpha
Helix 5
5
A
202 209Right-handed alpha
Helix 6
6
A
211 216Right-handed alpha
Helix 7
7
A
228 235Right-handed alpha
Helix 8
8
A
235 255Right-handed alpha
Helix 9
9
A
255 304Right-handed alpha
Helix 10
10
A
304 311Right-handed alpha
Helix 11
11
A
314 367Right-handed alpha
Helix 12
12
A
372 383Right-handed alpha
Helix 13
13
A
384 390Right-handed 310
Helix 14
14
A
396 412Right-handed alpha
Helix 15
15
A
474 476Right-handed 310
Helix 16
16
A
477 483Right-handed alpha
Helix 17
17
A
501 503Right-handed 310
Helix 18
18
A
504 511Right-handed alpha
Helix 19
19
A
526 531Right-handed alpha
Helix 20
20
A
532 534Right-handed 310
Helix 21
21
A
538 549Right-handed alpha
Helix 22
22
A
551 558Right-handed alpha
Helix 23
23
A
560 563Right-handed 310
Helix 24
24
A
574 590Right-handed alpha
Helix 25
25
A
604 619Right-handed alpha
Helix 26
26
A
632 637Right-handed 310
Helix 27
27
A
655 662Right-handed alpha
Helix 28
28
A
665 691Right-handed alpha
Helix 29
29
C
106 138Right-handed alpha
Helix 30
30
C
151 199Right-handed alpha
Helix 31
31
C
202 209Right-handed alpha
Helix 32
32
C
210 221Right-handed alpha
Helix 33
33
C
227 235Right-handed alpha
Helix 34
34
C
235 255Right-handed alpha
Helix 35
35
C
255 304Right-handed alpha
Helix 36
36
C
304 311Right-handed alpha
Helix 37
37
C
314 367Right-handed alpha
Helix 38
38
C
372 384Right-handed alpha
Helix 39
39
C
396 415Right-handed alpha
Helix 40
40
C
474 476Right-handed 310
Helix 41
41
C
477 483Right-handed alpha
Helix 42
42
C
501 503Right-handed 310
Helix 43
43
C
504 511Right-handed alpha
Helix 44
44
C
526 532Right-handed alpha
Helix 45
45
C
538 549Right-handed alpha
Helix 46
46
C
551 558Right-handed alpha
Helix 47
47
C
560 563Right-handed 310
Helix 48
48
C
574 590Right-handed alpha
Helix 49
49
C
604 619Right-handed alpha
Helix 50
50
C
632 637Right-handed 310
Helix 51
51
C
655 662Right-handed alpha
Helix 52
52
C
665 691Right-handed alpha
Helix 53
53
B
105 107Right-handed 310
Helix 54
54
B
108 138Right-handed alpha
Helix 55
55
B
151 199Right-handed alpha
Helix 56
56
B
202 209Right-handed alpha
Helix 57
57
B
211 221Right-handed alpha
Helix 58
58
B
228 235Right-handed alpha
Helix 59
59
B
235 255Right-handed alpha
Helix 60
60
B
255 285Right-handed alpha
Helix 61
61
B
286 304Right-handed alpha
Helix 62
62
B
304 311Right-handed alpha
Helix 63
63
B
314 367Right-handed alpha
Helix 64
64
B
372 384Right-handed alpha
Helix 65
65
B
385 390Right-handed 310
Helix 66
66
B
396 415Right-handed alpha
Helix 67
67
B
474 476Right-handed 310
Helix 68
68
B
477 483Right-handed alpha
Helix 69
69
B
501 503Right-handed 310
Helix 70
70
B
504 511Right-handed alpha
Helix 71
71
B
526 531Right-handed alpha
Helix 72
72
B
532 534Right-handed 310
Helix 73
73
B
538 549Right-handed alpha
Helix 74
74
B
551 558Right-handed alpha
Helix 75
75
B
560 563Right-handed 310
Helix 76
76
B
574 590Right-handed alpha
Helix 77
77
B
604 619Right-handed alpha
Helix 78
78
B
632 637Right-handed 310
Helix 79
79
B
655 662Right-handed alpha
Helix 80
80
B
665 691Right-handed alpha
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There are 9 sheets in PDB entry 4MYC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 459first strand
Strand 2
A
436 443anti-parallel
Strand 3
A
490 495anti-parallel
Strand 4
A
498 499anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 515first strand
Strand 2
A
593 597parallel
Strand 3
A
625 630parallel
Strand 4
A
464 468parallel
Strand 5
A
641 646parallel
Strand 6
A
649 654anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
565 566anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
452 459first strand
Strand 2
C
436 443anti-parallel
Strand 3
C
490 495anti-parallel
Strand 4
C
498 499anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
512 515first strand
Strand 2
C
593 597parallel
Strand 3
C
625 629parallel
Strand 4
C
464 468parallel
Strand 5
C
641 646parallel
Strand 6
C
649 654anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
524 525first strand
Strand 2
C
565 566anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 459first strand
Strand 2
B
436 443anti-parallel
Strand 3
B
490 495anti-parallel
Strand 4
B
498 499anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
512 515first strand
Strand 2
B
593 597parallel
Strand 3
B
625 629parallel
Strand 4
B
464 468parallel
Strand 5
B
641 646parallel
Strand 6
B
649 654anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 525first strand
Strand 2
B
565 566anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il