Analysis of interatomic Contacts of Structural Units in PDB entry:
4MYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MYF entry

There is 1 chain in PDB entry 4MYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5PRO 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4MYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed 310
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
34 39Right-handed 310
Helix 4
4
A
43 45Right-handed 310
Helix 5
5
A
46 56Right-handed alpha
Helix 6
6
A
85 103Right-handed alpha
Helix 7
7
A
113 115Right-handed 310
Helix 8
8
A
116 128Right-handed alpha
Helix 9
9
A
156 163Right-handed alpha
Helix 10
10
A
168 170Right-handed 310
Helix 11
11
A
178 182Right-handed 310
Helix 12
12
A
183 193Right-handed alpha
Helix 13
13
A
200 207Right-handed alpha
Helix 14
14
A
207 220Right-handed alpha
Helix 15
15
A
230 232Right-handed 310
Helix 16
16
A
249 263Right-handed alpha
Helix 17
17
A
281 300Right-handed alpha
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There are 2 sheets in PDB entry 4MYF. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
24 29parallel
Strand 3
A
106 111parallel
Strand 4
A
266 272parallel
Strand 5
A
223 228parallel
Strand 6
A
133 137parallel
Strand 7
A
172 177parallel
Strand 8
A
196 199parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
68 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il