Analysis of interatomic Contacts of Structural Units in PDB entry:
4MYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MYG entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 4MYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 15MET 179
A
 GLY 181GLY 181
A
 VAL 183PRO 351
B
 ASN 15MET 179
B
 GLY 181GLY 181
B
 VAL 183PRO 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4MYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 79Right-handed alpha
Helix 2
2
A
96 100Right-handed 310
Helix 3
3
A
123 144Right-handed alpha
Helix 4
4
A
152 154Right-handed 310
Helix 5
5
A
185 190Right-handed 310
Helix 6
6
A
191 196Right-handed alpha
Helix 7
7
A
202 219Right-handed alpha
Helix 8
8
A
227 239Right-handed alpha
Helix 9
9
A
243 248Right-handed alpha
Helix 10
10
A
255 260Right-handed alpha
Helix 11
11
A
269 274Right-handed alpha
Helix 12
12
A
278 289Right-handed alpha
Helix 13
13
A
298 304Right-handed alpha
Helix 14
14
A
305 309Right-handed 310
Helix 15
15
A
313 317Right-handed 310
Helix 16
16
A
334 348Right-handed alpha
Helix 17
17
B
62 79Right-handed alpha
Helix 18
18
B
96 100Right-handed 310
Helix 19
19
B
123 144Right-handed alpha
Helix 20
20
B
152 154Right-handed 310
Helix 21
21
B
185 190Right-handed 310
Helix 22
22
B
191 196Right-handed alpha
Helix 23
23
B
202 219Right-handed alpha
Helix 24
24
B
227 239Right-handed alpha
Helix 25
25
B
243 248Right-handed alpha
Helix 26
26
B
269 274Right-handed alpha
Helix 27
27
B
278 289Right-handed alpha
Helix 28
28
B
298 303Right-handed alpha
Helix 29
29
B
304 309Right-handed 310
Helix 30
30
B
334 348Right-handed alpha
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There are 6 sheets in PDB entry 4MYG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
103 108anti-parallel
Strand 5
A
89 91anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
164 166anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
173 174anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 32first strand
Strand 2
B
39 43anti-parallel
Strand 3
B
50 56anti-parallel
Strand 4
B
103 108anti-parallel
Strand 5
B
89 91anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
156 158anti-parallel
Strand 3
B
164 166anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
173 174anti-parallel
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