Analysis of interatomic Contacts of Structural Units in PDB entry:
4MYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MYR entry

There are 4 chains in PDB entry 4MYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 30PHE 152
B
 LYS 30ASP 154
C
 LYS 30SER 155
D
 VAL 31PHE 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4MYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 51Right-handed alpha
Helix 2
2
A
52 56Right-handed 310
Helix 3
3
A
66 75Right-handed alpha
Helix 4
4
A
90 105Right-handed alpha
Helix 5
5
A
119 129Right-handed alpha
Helix 6
6
A
140 152Right-handed alpha
Helix 7
7
B
39 51Right-handed alpha
Helix 8
8
B
52 56Right-handed 310
Helix 9
9
B
66 77Right-handed alpha
Helix 10
10
B
90 102Right-handed alpha
Helix 11
11
B
119 129Right-handed alpha
Helix 12
12
B
140 152Right-handed alpha
Helix 13
13
C
39 51Right-handed alpha
Helix 14
14
C
52 56Right-handed 310
Helix 15
15
C
66 74Right-handed alpha
Helix 16
16
C
90 103Right-handed alpha
Helix 17
17
C
119 129Right-handed alpha
Helix 18
18
C
140 152Right-handed alpha
Helix 19
19
D
39 51Right-handed alpha
Helix 20
20
D
52 56Right-handed 310
Helix 21
21
D
66 74Right-handed alpha
Helix 22
22
D
90 105Right-handed alpha
Helix 23
23
D
119 129Right-handed alpha
Helix 24
24
D
140 152Right-handed alpha
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There are 4 sheets in PDB entry 4MYR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 64first strand
Strand 2
A
31 37parallel
Strand 3
A
82 86parallel
Strand 4
A
110 115parallel
Strand 5
A
133 136parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 64first strand
Strand 2
B
31 37parallel
Strand 3
B
82 86parallel
Strand 4
B
110 115parallel
Strand 5
B
133 136parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 64first strand
Strand 2
C
31 37parallel
Strand 3
C
82 86parallel
Strand 4
C
110 115parallel
Strand 5
C
133 136parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 64first strand
Strand 2
D
32 37parallel
Strand 3
D
82 86parallel
Strand 4
D
110 115parallel
Strand 5
D
133 136parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il