Analysis of interatomic Contacts of Structural Units in PDB entry:
4MYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MYT entry

There is 1 chain in PDB entry 4MYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ILE 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4MYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
24 37Right-handed alpha
Helix 3
3
A
87 90Right-handed 310
Helix 4
4
A
91 101Right-handed alpha
Helix 5
5
A
115 128Right-handed alpha
Helix 6
6
A
145 158Right-handed alpha
Helix 7
7
A
205 221Right-handed alpha
Helix 8
8
A
224 233Right-handed alpha
Helix 9
9
A
238 252Right-handed alpha
Helix 10
10
A
268 279Right-handed alpha
Helix 11
11
A
421 434Right-handed alpha
Helix 12
12
A
456 467Right-handed alpha
Helix 13
13
A
535 537Right-handed 310
Helix 14
14
A
538 550Right-handed alpha
Helix 15
15
A
582 595Right-handed alpha
Helix 16
16
A
616 625Right-handed alpha
Helix 17
17
A
648 652Right-handed 310
Helix 18
18
A
654 661Right-handed alpha
Helix 19
19
A
680 687Right-handed alpha
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There are 12 sheets in PDB entry 4MYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
105 109parallel
Strand 3
A
133 137parallel
Strand 4
A
257 260parallel
Strand 5
A
162 163parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
81 82anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
77 78anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
176 179anti-parallel
Strand 3
A
184 187anti-parallel
Strand 4
A
197 199anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
300 301anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
349 356anti-parallel
Strand 3
A
374 379anti-parallel
Strand 4
A
324 332anti-parallel
Strand 5
A
310 318anti-parallel
Strand 6
A
388 391anti-parallel
Strand 7
A
340 343anti-parallel
Strand 8
A
349 356anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
368 369anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 442first strand
Strand 2
A
449 453anti-parallel
Strand 3
A
409 415anti-parallel
Strand 4
A
474 476anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 442first strand
Strand 2
A
449 453anti-parallel
Strand 3
A
409 415anti-parallel
Strand 4
A
480 481anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
675 678anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
509 516anti-parallel
Strand 3
A
563 571anti-parallel
Strand 4
A
523 527parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 612first strand
Strand 2
A
640 645anti-parallel
Strand 3
A
634 637anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il