Analysis of interatomic Contacts of Structural Units in PDB entry:
4MZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MZD entry

There is 1 chain in PDB entry 4MZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 224ARG 647
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4MZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
227 230Right-handed 310
Helix 2
2
A
231 239Right-handed alpha
Helix 3
3
A
241 247Right-handed alpha
Helix 4
4
A
269 271Right-handed 310
Helix 5
5
A
285 289Right-handed 310
Helix 6
6
A
305 316Right-handed alpha
Helix 7
7
A
341 355Right-handed alpha
Helix 8
8
A
380 398Right-handed alpha
Helix 9
9
A
414 424Right-handed alpha
Helix 10
10
A
474 488Right-handed alpha
Helix 11
11
A
490 495Right-handed alpha
Helix 12
12
A
510 513Right-handed 310
Helix 13
13
A
514 530Right-handed alpha
Helix 14
14
A
533 543Right-handed alpha
Helix 15
15
A
555 562Right-handed alpha
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There are 5 sheets in PDB entry 4MZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 279first strand
Strand 2
A
328 333parallel
Strand 3
A
254 259parallel
Strand 4
A
359 362parallel
Strand 5
A
400 404parallel
Strand 6
A
445 450parallel
Strand 7
A
467 470parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 437first strand
Strand 2
A
364 369anti-parallel
Strand 3
A
645 646anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
428 430anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 499first strand
Strand 2
A
505 508anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
551 552anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il