Analysis of interatomic Contacts of Structural Units in PDB entry:
4MZO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4MZO entry

There are 8 chains in PDB entry 4MZO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 123	ILE 340
B	THR 122	ILE 340
C	LEU 123	ILE 340
D	LEU 123	ILE 340
E	LEU 123	ILE 340
F	THR 122	ILE 340
G	LEU 123	ILE 340
H	LEU 123	ILE 340

There are 72 helices in PDB entry 4MZO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	130	133	Right-handed 310
Helix 2	2	A	146	165	Right-handed alpha
Helix 3	3	A	171	179	Right-handed alpha
Helix 4	4	A	187	191	Right-handed 310
Helix 5	5	A	193	205	Right-handed alpha
Helix 6	6	A	225	227	Right-handed 310
Helix 7	7	A	243	254	Right-handed alpha
Helix 8	8	A	265	270	Right-handed alpha
Helix 9	9	A	327	331	Right-handed 310
Helix 10	10	B	130	133	Right-handed 310
Helix 11	11	B	146	165	Right-handed alpha
Helix 12	12	B	171	179	Right-handed alpha
Helix 13	13	B	187	191	Right-handed 310
Helix 14	14	B	193	205	Right-handed alpha
Helix 15	15	B	225	227	Right-handed 310
Helix 16	16	B	243	254	Right-handed alpha
Helix 17	17	B	265	270	Right-handed alpha
Helix 18	18	B	327	331	Right-handed 310
Helix 19	19	C	130	133	Right-handed 310
Helix 20	20	C	146	165	Right-handed alpha
Helix 21	21	C	171	179	Right-handed alpha
Helix 22	22	C	187	191	Right-handed 310
Helix 23	23	C	193	205	Right-handed alpha
Helix 24	24	C	225	227	Right-handed 310
Helix 25	25	C	243	254	Right-handed alpha
Helix 26	26	C	265	270	Right-handed alpha
Helix 27	27	C	327	331	Right-handed 310
Helix 28	28	D	130	133	Right-handed 310
Helix 29	29	D	146	165	Right-handed alpha
Helix 30	30	D	171	179	Right-handed alpha
Helix 31	31	D	187	191	Right-handed 310
Helix 32	32	D	193	205	Right-handed alpha
Helix 33	33	D	225	227	Right-handed 310
Helix 34	34	D	243	254	Right-handed alpha
Helix 35	35	D	265	270	Right-handed alpha
Helix 36	36	D	327	331	Right-handed 310
Helix 37	37	E	130	133	Right-handed 310
Helix 38	38	E	146	165	Right-handed alpha
Helix 39	39	E	171	179	Right-handed alpha
Helix 40	40	E	187	191	Right-handed 310
Helix 41	41	E	193	204	Right-handed alpha
Helix 42	42	E	225	227	Right-handed 310
Helix 43	43	E	243	254	Right-handed alpha
Helix 44	44	E	265	270	Right-handed alpha
Helix 45	45	E	327	331	Right-handed 310
Helix 46	46	F	130	133	Right-handed 310
Helix 47	47	F	146	165	Right-handed alpha
Helix 48	48	F	171	179	Right-handed alpha
Helix 49	49	F	187	191	Right-handed 310
Helix 50	50	F	193	205	Right-handed alpha
Helix 51	51	F	225	227	Right-handed 310
Helix 52	52	F	243	254	Right-handed alpha
Helix 53	53	F	265	270	Right-handed alpha
Helix 54	54	F	327	331	Right-handed 310
Helix 55	55	G	130	133	Right-handed 310
Helix 56	56	G	146	165	Right-handed alpha
Helix 57	57	G	171	179	Right-handed alpha
Helix 58	58	G	187	191	Right-handed 310
Helix 59	59	G	193	205	Right-handed alpha
Helix 60	60	G	225	227	Right-handed 310
Helix 61	61	G	243	254	Right-handed alpha
Helix 62	62	G	265	270	Right-handed alpha
Helix 63	63	G	327	331	Right-handed 310
Helix 64	64	H	130	133	Right-handed 310
Helix 65	65	H	146	165	Right-handed alpha
Helix 66	66	H	171	179	Right-handed alpha
Helix 67	67	H	187	191	Right-handed 310
Helix 68	68	H	193	205	Right-handed alpha
Helix 69	69	H	225	227	Right-handed 310
Helix 70	70	H	243	254	Right-handed alpha
Helix 71	71	H	265	270	Right-handed alpha
Helix 72	72	H	327	331	Right-handed 310

There are 31 sheets in PDB entry 4MZO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	287	297	anti-parallel
Strand 3	A	257	261	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	287	297	anti-parallel
Strand 3	A	300	306	anti-parallel
Strand 4	A	318	322	anti-parallel
Strand 5	A	275	276	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	229	231	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	336	339	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	287	297	anti-parallel
Strand 3	B	257	261	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	287	297	anti-parallel
Strand 3	B	300	306	anti-parallel
Strand 4	B	318	322	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	229	231	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	336	339	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	287	297	anti-parallel
Strand 3	C	257	261	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	287	297	anti-parallel
Strand 3	C	300	306	anti-parallel
Strand 4	C	318	322	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	229	231	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	238	first strand
Strand 2	C	336	339	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	287	297	anti-parallel
Strand 3	D	257	261	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	287	297	anti-parallel
Strand 3	D	300	306	anti-parallel
Strand 4	D	318	322	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	229	231	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	238	first strand
Strand 2	D	336	339	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	287	297	anti-parallel
Strand 3	E	257	261	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	287	297	anti-parallel
Strand 3	E	300	306	anti-parallel
Strand 4	E	318	322	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	229	231	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	238	first strand
Strand 2	E	336	339	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	287	297	anti-parallel
Strand 3	F	257	261	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	287	297	anti-parallel
Strand 3	F	300	306	anti-parallel
Strand 4	F	318	322	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	208	first strand
Strand 2	F	229	231	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	238	first strand
Strand 2	F	336	339	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	128	first strand
Strand 2	G	287	297	anti-parallel
Strand 3	G	257	261	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	128	first strand
Strand 2	G	287	297	anti-parallel
Strand 3	G	300	306	anti-parallel
Strand 4	G	318	322	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	207	208	first strand
Strand 2	G	229	231	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	238	first strand
Strand 2	G	336	339	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	128	first strand
Strand 2	H	287	297	anti-parallel
Strand 3	H	257	261	anti-parallel
Strand 4	H	335	339	anti-parallel
Strand 5	H	235	238	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	128	first strand
Strand 2	H	287	297	anti-parallel
Strand 3	H	300	306	anti-parallel
Strand 4	H	318	322	anti-parallel
Strand 5	H	275	276	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	207	208	first strand
Strand 2	H	229	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4MZO

Analysis of interatomic Contacts of Structural Units in PDB entry:
4MZO