Analysis of interatomic Contacts of Structural Units in PDB entry:
4N0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4N0I entry

There are 3 chains in PDB entry 4N0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6SER 464
B
 TYR 27PRO 327
F
 GLY 29GLU 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 4N0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 22Right-handed alpha
Helix 2
2
A
66 70Right-handed 310
Helix 3
3
A
78 87Right-handed alpha
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
A
131 140Right-handed alpha
Helix 7
7
A
155 162Right-handed alpha
Helix 8
8
A
195 207Right-handed alpha
Helix 9
9
A
218 228Right-handed alpha
Helix 10
10
A
242 244Right-handed 310
Helix 11
11
A
251 265Right-handed alpha
Helix 12
12
A
275 279Right-handed 310
Helix 13
13
A
280 297Right-handed alpha
Helix 14
14
A
320 325Right-handed alpha
Helix 15
15
A
328 343Right-handed alpha
Helix 16
16
A
343 369Right-handed alpha
Helix 17
17
A
399 410Right-handed alpha
Helix 18
18
A
410 416Right-handed alpha
Helix 19
19
A
417 419Right-handed 310
Helix 20
20
A
421 427Right-handed alpha
Helix 21
21
A
452 463Right-handed alpha
Helix 22
22
B
79 94Right-handed alpha
Helix 23
23
B
136 140Right-handed alpha
Helix 24
24
B
195 213Right-handed alpha
Helix 25
25
B
246 264Right-handed alpha
Helix 26
26
B
312 322Right-handed alpha
Helix 27
27
F
38 47Right-handed alpha
Helix 28
28
F
52 57Right-handed alpha
Helix 29
29
F
70 81Right-handed alpha
Helix 30
30
F
89 105Right-handed alpha
Helix 31
31
F
106 110Right-handed 310
Helix 32
32
F
134 145Right-handed alpha
Helix 33
33
F
148 152Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 4N0I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
48 52parallel
Strand 4
A
145 150parallel
Strand 5
A
188 193anti-parallel
Strand 6
A
165 168anti-parallel
Strand 7
A
431 435anti-parallel
Strand 8
A
443 447anti-parallel
Strand 9
A
387 391anti-parallel
Strand 10
A
236 240parallel
Strand 11
A
269 274parallel
Strand 12
F
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
318 319anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
127 128anti-parallel
Strand 3
B
145 157anti-parallel
Strand 4
B
131 135anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
127 128anti-parallel
Strand 3
B
145 157anti-parallel
Strand 4
B
183 189anti-parallel
Strand 5
B
29 38anti-parallel
Strand 6
B
225 233anti-parallel
Strand 7
B
239 241anti-parallel
Strand 8
B
277 279parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
309 310anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 120first strand
Strand 2
B
104 107anti-parallel
Strand 3
B
301 302anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
172 176anti-parallel
Strand 3
F
172 175anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il