Analysis of interatomic Contacts of Structural Units in PDB entry:
4N49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4N49 entry

There is 1 chain in PDB entry 4N49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 141VAL 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4N49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
192 205Right-handed alpha
Helix 2
2
A
206 209Right-handed 310
Helix 3
3
A
210 222Right-handed alpha
Helix 4
4
A
224 228Right-handed 310
Helix 5
5
A
234 247Right-handed alpha
Helix 6
6
A
264 268Right-handed 310
Helix 7
7
A
281 292Right-handed alpha
Helix 8
8
A
309 313Right-handed 310
Helix 9
9
A
338 352Right-handed alpha
Helix 10
10
A
372 374Right-handed 310
Helix 11
11
A
375 380Right-handed alpha
Helix 12
12
A
380 394Right-handed alpha
Helix 13
13
A
410 423Right-handed alpha
Helix 14
14
A
453 471Right-handed alpha
Helix 15
15
A
482 488Right-handed alpha
Helix 16
16
A
489 520Right-handed alpha
Helix 17
17
A
527 540Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4N49. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
475 479anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
295 300parallel
Strand 3
A
271 276parallel
Strand 4
A
358 363parallel
Strand 5
A
395 405parallel
Strand 6
A
442 449anti-parallel
Strand 7
A
424 430anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il