Analysis of interatomic Contacts of Structural Units in PDB entry:
4N59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4N59 entry

There are 2 chains in PDB entry 4N59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 271
B
 ALA 2HIS 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 4N59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 30Right-handed alpha
Helix 2
2
A
66 69Right-handed 310
Helix 3
3
A
75 77Right-handed 310
Helix 4
4
A
89 93Right-handed 310
Helix 5
5
A
95 111Right-handed alpha
Helix 6
6
A
127 139Right-handed alpha
Helix 7
7
A
156 159Right-handed 310
Helix 8
8
A
160 168Right-handed alpha
Helix 9
9
A
186 188Right-handed 310
Helix 10
10
A
189 197Right-handed alpha
Helix 11
11
A
234 241Right-handed alpha
Helix 12
12
B
22 30Right-handed alpha
Helix 13
13
B
64 69Right-handed alpha
Helix 14
14
B
75 77Right-handed 310
Helix 15
15
B
89 93Right-handed 310
Helix 16
16
B
95 103Right-handed alpha
Helix 17
17
B
105 113Right-handed alpha
Helix 18
18
B
114 116Right-handed 310
Helix 19
19
B
127 139Right-handed alpha
Helix 20
20
B
147 151Right-handed 310
Helix 21
21
B
156 159Right-handed 310
Helix 22
22
B
160 168Right-handed alpha
Helix 23
23
B
186 188Right-handed 310
Helix 24
24
B
189 197Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4N59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
83 86parallel
Strand 4
A
47 52anti-parallel
Strand 5
A
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
144 145parallel
Strand 3
A
255 258parallel
Strand 4
A
226 228anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 184first strand
Strand 2
A
198 209anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
263 270anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
4 8anti-parallel
Strand 3
B
83 86parallel
Strand 4
B
47 52anti-parallel
Strand 5
B
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
144 145parallel
Strand 3
B
255 258parallel
Strand 4
B
226 228anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 184first strand
Strand 2
B
198 209anti-parallel
Strand 3
B
214 223anti-parallel
Strand 4
B
263 270anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il