Analysis of interatomic Contacts of Structural Units in PDB entry:
4N6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4N6D entry

There is 1 chain in PDB entry 4N6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28GLN 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4N6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 59Right-handed alpha
Helix 2
2
A
78 85Right-handed alpha
Helix 3
3
A
96 98Right-handed 310
Helix 4
4
A
104 110Right-handed 310
Helix 5
5
A
116 132Right-handed alpha
Helix 6
6
A
133 137Right-handed 310
Helix 7
7
A
160 165Right-handed 310
Helix 8
8
A
172 182Right-handed alpha
Helix 9
9
A
190 192Right-handed 310
Helix 10
10
A
193 200Right-handed alpha
Helix 11
11
A
211 216Right-handed alpha
Helix 12
12
A
217 221Right-handed 310
Helix 13
13
A
241 246Right-handed alpha
Helix 14
14
A
248 286Right-handed alpha
Helix 15
15
A
293 318Right-handed alpha
Helix 16
16
A
321 338Right-handed alpha
Helix 17
17
A
342 346Right-handed 310
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There are 3 sheets in PDB entry 4N6D. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
30 35parallel
Strand 3
A
90 94parallel
Strand 4
A
234 240anti-parallel
Strand 5
A
139 146anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
224 226anti-parallel
Strand 4
A
288 290parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
185 187parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il