Analysis of interatomic Contacts of Structural Units in PDB entry:
4N7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4N7V entry

There are 3 chains in PDB entry 4N7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 586PRO 807
B
 THR 586PRO 807
C
 GLU 15SER 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4N7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
682 698Right-handed alpha
Helix 2
2
A
754 760Right-handed alpha
Helix 3
3
A
764 792Right-handed alpha
Helix 4
4
B
586 591Right-handed 310
Helix 5
5
B
650 655Right-handed 310
Helix 6
6
B
686 698Right-handed alpha
Helix 7
7
B
757 761Right-handed 310
Helix 8
8
B
762 793Right-handed alpha
Helix 9
9
C
20 36Right-handed alpha
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There are 5 sheets in PDB entry 4N7V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 604first strand
Strand 2
A
609 613anti-parallel
Strand 3
A
619 627anti-parallel
Strand 4
A
630 639anti-parallel
Strand 5
A
657 658anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 604first strand
Strand 2
A
609 613anti-parallel
Strand 3
A
619 627anti-parallel
Strand 4
A
630 639anti-parallel
Strand 5
A
645 649anti-parallel
Strand 6
A
670 674anti-parallel
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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 751first strand
Strand 2
A
740 743anti-parallel
Strand 3
A
732 735anti-parallel
Strand 4
A
723 727anti-parallel
Strand 5
A
710 715anti-parallel
Strand 6
A
701 706anti-parallel
Strand 7
A
801 803parallel
Strand 8
B
801 803anti-parallel
Strand 9
B
701 706parallel
Strand 10
B
711 715anti-parallel
Strand 11
B
723 726anti-parallel
Strand 12
B
732 735anti-parallel
Strand 13
B
741 743anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
602 605first strand
Strand 2
B
609 613anti-parallel
Strand 3
B
619 627anti-parallel
Strand 4
B
630 639anti-parallel
Strand 5
B
657 658anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
602 605first strand
Strand 2
B
609 613anti-parallel
Strand 3
B
619 627anti-parallel
Strand 4
B
630 639anti-parallel
Strand 5
B
645 649anti-parallel
Strand 6
B
671 674anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il