Analysis of interatomic Contacts of Structural Units in PDB entry:
4N88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4N88 entry

There are 4 chains in PDB entry 4N88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASP 402
B
 MET 26GLN 145
C
 THR 2ASP 402
D
 MET 26GLN 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 4N88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
22 35Right-handed alpha
Helix 3
3
A
38 48Right-handed alpha
Helix 4
4
A
50 59Right-handed alpha
Helix 5
5
A
61 74Right-handed alpha
Helix 6
6
A
79 91Right-handed alpha
Helix 7
7
A
100 104Right-handed 310
Helix 8
8
A
107 125Right-handed alpha
Helix 9
9
A
146 151Right-handed alpha
Helix 10
10
A
153 157Right-handed 310
Helix 11
11
A
161 170Right-handed alpha
Helix 12
12
A
172 180Right-handed alpha
Helix 13
13
A
185 192Right-handed alpha
Helix 14
14
A
194 208Right-handed alpha
Helix 15
15
A
214 218Right-handed 310
Helix 16
16
A
224 237Right-handed alpha
Helix 17
17
A
239 253Right-handed alpha
Helix 18
18
A
255 265Right-handed alpha
Helix 19
19
A
283 289Right-handed alpha
Helix 20
20
A
297 304Right-handed alpha
Helix 21
21
A
305 313Right-handed alpha
Helix 22
22
A
315 336Right-handed alpha
Helix 23
23
A
338 341Right-handed 310
Helix 24
24
A
342 349Right-handed alpha
Helix 25
25
A
354 359Right-handed 310
Helix 26
26
A
360 364Right-handed 310
Helix 27
27
A
365 378Right-handed alpha
Helix 28
28
A
388 402Right-handed alpha
Helix 29
29
B
132 141Right-handed alpha
Helix 30
30
C
3 13Right-handed alpha
Helix 31
31
C
22 35Right-handed alpha
Helix 32
32
C
38 49Right-handed alpha
Helix 33
33
C
50 59Right-handed alpha
Helix 34
34
C
61 76Right-handed alpha
Helix 35
35
C
79 90Right-handed alpha
Helix 36
36
C
100 104Right-handed 310
Helix 37
37
C
107 125Right-handed alpha
Helix 38
38
C
146 151Right-handed alpha
Helix 39
39
C
153 157Right-handed 310
Helix 40
40
C
161 171Right-handed alpha
Helix 41
41
C
172 180Right-handed alpha
Helix 42
42
C
185 193Right-handed alpha
Helix 43
43
C
194 208Right-handed alpha
Helix 44
44
C
214 218Right-handed 310
Helix 45
45
C
224 237Right-handed alpha
Helix 46
46
C
239 253Right-handed alpha
Helix 47
47
C
255 268Right-handed alpha
Helix 48
48
C
283 289Right-handed alpha
Helix 49
49
C
297 304Right-handed alpha
Helix 50
50
C
305 313Right-handed alpha
Helix 51
51
C
315 336Right-handed alpha
Helix 52
52
C
338 341Right-handed 310
Helix 53
53
C
342 349Right-handed alpha
Helix 54
54
C
355 359Right-handed 310
Helix 55
55
C
360 364Right-handed 310
Helix 56
56
C
365 378Right-handed alpha
Helix 57
57
C
388 402Right-handed alpha
Helix 58
58
D
132 141Right-handed alpha
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There are 7 sheets in PDB entry 4N88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
281 282anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
143 144anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
67 70anti-parallel
Strand 4
B
115 121anti-parallel
Strand 5
B
101 112anti-parallel
Strand 6
B
88 98anti-parallel
Strand 7
B
79 81anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
67 70anti-parallel
Strand 4
B
115 121anti-parallel
Strand 5
B
101 112anti-parallel
Strand 6
B
124 125anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
275 276first strand
Strand 2
C
281 282anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 29first strand
Strand 2
D
35 36anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 46first strand
Strand 2
D
51 55anti-parallel
Strand 3
D
64 70anti-parallel
Strand 4
D
115 125anti-parallel
Strand 5
D
101 112anti-parallel
Strand 6
D
89 98anti-parallel
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