Analysis of interatomic Contacts of Structural Units in PDB entry:
4N8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4N8J entry

There are 2 chains in PDB entry 4N8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET -6	ILE 440
B	MET -6	ILE 195

There are 86 helices in PDB entry 4N8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	-3	2	Right-handed alpha
Helix 2	2	A	2	11	Right-handed alpha
Helix 3	3	A	13	19	Right-handed alpha
Helix 4	4	A	31	35	Right-handed 310
Helix 5	5	A	36	49	Right-handed alpha
Helix 6	6	A	63	68	Right-handed alpha
Helix 7	7	A	72	76	Right-handed 310
Helix 8	8	A	87	100	Right-handed alpha
Helix 9	9	A	112	114	Right-handed 310
Helix 10	10	A	115	122	Right-handed alpha
Helix 11	11	A	150	158	Right-handed alpha
Helix 12	12	A	182	184	Right-handed 310
Helix 13	13	A	205	216	Right-handed alpha
Helix 14	14	A	228	238	Right-handed alpha
Helix 15	15	A	239	241	Right-handed 310
Helix 16	16	A	252	261	Right-handed alpha
Helix 17	17	A	284	291	Right-handed alpha
Helix 18	18	A	301	306	Right-handed alpha
Helix 19	19	A	307	312	Right-handed alpha
Helix 20	20	A	346	358	Right-handed alpha
Helix 21	21	A	410	422	Right-handed alpha
Helix 22	22	A	423	437	Right-handed alpha
Helix 23	23	B	-3	2	Right-handed alpha
Helix 24	24	B	2	11	Right-handed alpha
Helix 25	25	B	13	19	Right-handed alpha
Helix 26	26	B	31	35	Right-handed 310
Helix 27	27	B	36	49	Right-handed alpha
Helix 28	28	B	63	68	Right-handed alpha
Helix 29	29	B	72	76	Right-handed 310
Helix 30	30	B	87	100	Right-handed alpha
Helix 31	31	B	112	114	Right-handed 310
Helix 32	32	B	115	122	Right-handed alpha
Helix 33	33	B	150	158	Right-handed alpha
Helix 34	34	B	182	184	Right-handed 310
Helix 35	35	B	204	216	Right-handed alpha
Helix 36	36	B	228	238	Right-handed alpha
Helix 37	37	B	239	241	Right-handed 310
Helix 38	38	B	252	261	Right-handed alpha
Helix 39	39	B	284	292	Right-handed alpha
Helix 40	40	B	301	306	Right-handed alpha
Helix 41	41	B	307	312	Right-handed alpha
Helix 42	42	B	346	358	Right-handed alpha
Helix 43	43	B	410	422	Right-handed alpha
Helix 44	44	B	423	437	Right-handed alpha
Helix 45	45	C	2	11	Right-handed alpha
Helix 46	46	C	13	19	Right-handed alpha
Helix 47	47	C	31	35	Right-handed 310
Helix 48	48	C	36	49	Right-handed alpha
Helix 49	49	C	63	68	Right-handed alpha
Helix 50	50	C	72	76	Right-handed 310
Helix 51	51	C	87	100	Right-handed alpha
Helix 52	52	C	112	114	Right-handed 310
Helix 53	53	C	115	122	Right-handed alpha
Helix 54	54	C	150	158	Right-handed alpha
Helix 55	55	C	182	184	Right-handed 310
Helix 56	56	C	204	216	Right-handed alpha
Helix 57	57	C	228	238	Right-handed alpha
Helix 58	58	C	239	241	Right-handed 310
Helix 59	59	C	252	261	Right-handed alpha
Helix 60	60	C	284	292	Right-handed alpha
Helix 61	61	C	301	306	Right-handed alpha
Helix 62	62	C	307	312	Right-handed alpha
Helix 63	63	C	347	358	Right-handed alpha
Helix 64	64	C	410	420	Right-handed alpha
Helix 65	65	C	423	437	Right-handed alpha
Helix 66	66	D	2	11	Right-handed alpha
Helix 67	67	D	13	19	Right-handed alpha
Helix 68	68	D	31	35	Right-handed 310
Helix 69	69	D	36	49	Right-handed alpha
Helix 70	70	D	63	68	Right-handed alpha
Helix 71	71	D	72	76	Right-handed 310
Helix 72	72	D	87	100	Right-handed alpha
Helix 73	73	D	112	114	Right-handed 310
Helix 74	74	D	115	122	Right-handed alpha
Helix 75	75	D	150	158	Right-handed alpha
Helix 76	76	D	182	184	Right-handed 310
Helix 77	77	D	204	216	Right-handed alpha
Helix 78	78	D	228	238	Right-handed alpha
Helix 79	79	D	239	241	Right-handed 310
Helix 80	80	D	252	261	Right-handed alpha
Helix 81	81	D	284	292	Right-handed alpha
Helix 82	82	D	301	306	Right-handed alpha
Helix 83	83	D	307	312	Right-handed alpha
Helix 84	84	D	347	358	Right-handed alpha
Helix 85	85	D	410	422	Right-handed alpha
Helix 86	86	D	423	437	Right-handed alpha

There are 28 sheets in PDB entry 4N8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	55	59	parallel
Strand 3	A	26	29	parallel
Strand 4	A	128	133	parallel
Strand 5	A	160	165	parallel
Strand 6	A	186	189	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	178	180	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	222	225	parallel
Strand 3	A	317	322	parallel
Strand 4	A	362	366	parallel
Strand 5	A	396	399	parallel
Strand 6	A	402	405	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	280	281	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	297	299	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	325	327	anti-parallel
Strand 3	A	379	380	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	376	377	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	55	59	parallel
Strand 3	B	26	29	parallel
Strand 4	B	128	133	parallel
Strand 5	B	160	165	parallel
Strand 6	B	186	189	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	178	180	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	222	225	parallel
Strand 3	B	317	322	parallel
Strand 4	B	362	366	parallel
Strand 5	B	396	399	parallel
Strand 6	B	402	405	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	280	281	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	297	299	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	325	327	anti-parallel
Strand 3	B	379	380	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	376	377	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	79	83	parallel
Strand 3	C	55	59	parallel
Strand 4	C	26	29	parallel
Strand 5	C	128	133	parallel
Strand 6	C	160	165	parallel
Strand 7	C	186	189	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	178	180	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	297	299	parallel
Strand 3	C	276	278	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	222	225	parallel
Strand 3	C	317	322	parallel
Strand 4	C	362	366	parallel
Strand 5	C	396	399	parallel
Strand 6	C	402	405	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	280	281	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	325	327	anti-parallel
Strand 3	C	379	380	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	376	377	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	79	83	parallel
Strand 3	D	55	59	parallel
Strand 4	D	26	29	parallel
Strand 5	D	128	133	parallel
Strand 6	D	160	165	parallel
Strand 7	D	186	189	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	178	180	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	222	225	parallel
Strand 3	D	317	322	parallel
Strand 4	D	362	366	parallel
Strand 5	D	396	399	parallel
Strand 6	D	402	405	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	251	first strand
Strand 2	D	280	281	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	278	first strand
Strand 2	D	297	299	parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	325	327	anti-parallel
Strand 3	D	379	380	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	371	first strand
Strand 2	D	376	377	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4N8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
4N8J