Analysis of interatomic Contacts of Structural Units in PDB entry:
4N8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4N8L entry

There are 2 chains in PDB entry 4N8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 440
B
 MET 1LEU 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4N8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
13 19Right-handed alpha
Helix 3
3
A
31 35Right-handed 310
Helix 4
4
A
36 49Right-handed alpha
Helix 5
5
A
63 68Right-handed alpha
Helix 6
6
A
72 76Right-handed 310
Helix 7
7
A
87 100Right-handed alpha
Helix 8
8
A
112 114Right-handed 310
Helix 9
9
A
115 122Right-handed alpha
Helix 10
10
A
150 158Right-handed alpha
Helix 11
11
A
182 184Right-handed 310
Helix 12
12
A
204 215Right-handed alpha
Helix 13
13
A
228 235Right-handed alpha
Helix 14
14
A
236 239Right-handed 310
Helix 15
15
A
252 261Right-handed alpha
Helix 16
16
A
284 291Right-handed alpha
Helix 17
17
A
301 306Right-handed alpha
Helix 18
18
A
307 312Right-handed alpha
Helix 19
19
A
347 358Right-handed alpha
Helix 20
20
A
410 420Right-handed alpha
Helix 21
21
A
423 437Right-handed alpha
Helix 22
22
B
2 11Right-handed alpha
Helix 23
23
B
13 19Right-handed alpha
Helix 24
24
B
31 35Right-handed 310
Helix 25
25
B
36 49Right-handed alpha
Helix 26
26
B
63 68Right-handed alpha
Helix 27
27
B
72 76Right-handed 310
Helix 28
28
B
87 100Right-handed alpha
Helix 29
29
B
112 114Right-handed 310
Helix 30
30
B
115 122Right-handed alpha
Helix 31
31
B
150 158Right-handed alpha
Helix 32
32
B
182 184Right-handed 310
Helix 33
33
B
205 215Right-handed alpha
Helix 34
34
B
228 235Right-handed alpha
Helix 35
35
B
236 241Right-handed 310
Helix 36
36
B
252 261Right-handed alpha
Helix 37
37
B
284 291Right-handed alpha
Helix 38
38
B
301 306Right-handed alpha
Helix 39
39
B
307 312Right-handed alpha
Helix 40
40
B
347 358Right-handed alpha
Helix 41
41
B
410 420Right-handed alpha
Helix 42
42
B
423 437Right-handed alpha
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There are 14 sheets in PDB entry 4N8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
55 59parallel
Strand 3
A
26 29parallel
Strand 4
A
128 133parallel
Strand 5
A
160 165parallel
Strand 6
A
186 189parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
178 180anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
222 225parallel
Strand 3
A
317 322parallel
Strand 4
A
362 366parallel
Strand 5
A
396 399parallel
Strand 6
A
402 405anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
280 281parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
297 299parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
332 333anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
376 377anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
79 83parallel
Strand 3
B
55 59parallel
Strand 4
B
26 29parallel
Strand 5
B
128 133parallel
Strand 6
B
160 165parallel
Strand 7
B
186 189parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
178 180anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
222 225parallel
Strand 3
B
317 322parallel
Strand 4
B
362 366parallel
Strand 5
B
396 399parallel
Strand 6
B
402 405anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
280 281parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
297 299parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
325 327anti-parallel
Strand 3
B
379 380parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 371first strand
Strand 2
B
376 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il