Analysis of interatomic Contacts of Structural Units in PDB entry:
4N8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4N8V entry

There are 8 chains in PDB entry 4N8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LYS 7	THR 200
I	LYS 7	THR 200
A	GLY 1	TRP 274
B	MET 0	MET 99
C	MET 1	LYS 9
D	GLY 1	TRP 274
E	ILE 1	MET 99
F	MET 1	LYS 9

There are 14 helices in PDB entry 4N8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	49	53	Right-handed 310
Helix 2	2	A	56	85	Right-handed alpha
Helix 3	3	A	137	150	Right-handed alpha
Helix 4	4	A	151	162	Right-handed alpha
Helix 5	5	A	162	175	Right-handed alpha
Helix 6	6	A	175	180	Right-handed alpha
Helix 7	7	A	253	255	Right-handed 310
Helix 8	8	D	49	53	Right-handed 310
Helix 9	9	D	56	85	Right-handed alpha
Helix 10	10	D	137	150	Right-handed alpha
Helix 11	11	D	151	162	Right-handed alpha
Helix 12	12	D	162	175	Right-handed alpha
Helix 13	13	D	175	180	Right-handed alpha
Helix 14	14	D	253	255	Right-handed 310

There are 24 sheets in PDB entry 4N8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	24	29	anti-parallel
Strand 3	G	61	66	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	19	first strand
Strand 2	G	97	102	parallel
Strand 3	G	75	82	anti-parallel
Strand 4	G	36	42	anti-parallel
Strand 5	G	47	51	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	113	first strand
Strand 2	G	123	130	anti-parallel
Strand 3	G	160	168	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	119	first strand
Strand 2	G	195	200	parallel
Strand 3	G	173	181	anti-parallel
Strand 4	G	136	141	anti-parallel
Strand 5	G	148	151	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	119	first strand
Strand 2	G	195	200	parallel
Strand 3	G	173	181	anti-parallel
Strand 4	G	184	188	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	24	29	anti-parallel
Strand 3	I	61	66	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	19	first strand
Strand 2	I	97	102	parallel
Strand 3	I	75	81	anti-parallel
Strand 4	I	37	42	anti-parallel
Strand 5	I	47	51	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	109	113	first strand
Strand 2	I	123	130	anti-parallel
Strand 3	I	160	168	anti-parallel
Strand 4	I	153	154	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	117	119	first strand
Strand 2	I	195	200	parallel
Strand 3	I	173	181	anti-parallel
Strand 4	I	136	141	anti-parallel
Strand 5	I	148	151	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	117	119	first strand
Strand 2	I	195	200	parallel
Strand 3	I	173	181	anti-parallel
Strand 4	I	184	188	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	228	230	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	214	219	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	270	272	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	31	37	anti-parallel
Strand 3	D	21	28	anti-parallel
Strand 4	D	3	12	anti-parallel
Strand 5	D	94	103	anti-parallel
Strand 6	D	109	118	anti-parallel
Strand 7	D	121	126	anti-parallel
Strand 8	D	133	135	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	193	first strand
Strand 2	D	198	208	anti-parallel
Strand 3	D	241	250	anti-parallel
Strand 4	D	228	230	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	193	first strand
Strand 2	D	198	208	anti-parallel
Strand 3	D	241	250	anti-parallel
Strand 4	D	234	235	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	223	first strand
Strand 2	D	214	219	anti-parallel
Strand 3	D	257	262	anti-parallel
Strand 4	D	270	272	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	21	30	anti-parallel
Strand 3	E	62	70	anti-parallel
Strand 4	E	50	51	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	21	30	anti-parallel
Strand 3	E	62	70	anti-parallel
Strand 4	E	55	56	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	36	41	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4N8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
4N8V