Analysis of interatomic Contacts of Structural Units in PDB entry:
4N9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4N9Y entry

There is 1 chain in PDB entry 4N9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 442SER 956
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4N9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
450 454Right-handed 310
Helix 2
2
A
478 482Right-handed 310
Helix 3
3
A
528 537Right-handed alpha
Helix 4
4
A
542 552Right-handed alpha
Helix 5
5
A
553 558Right-handed 310
Helix 6
6
A
563 572Right-handed alpha
Helix 7
7
A
575 585Right-handed alpha
Helix 8
8
A
585 596Right-handed alpha
Helix 9
9
A
596 601Right-handed alpha
Helix 10
10
A
620 632Right-handed alpha
Helix 11
11
A
654 659Right-handed 310
Helix 12
12
A
663 682Right-handed alpha
Helix 13
13
A
700 704Right-handed 310
Helix 14
14
A
718 723Right-handed alpha
Helix 15
15
A
746 755Right-handed alpha
Helix 16
16
A
756 759Right-handed 310
Helix 17
17
A
760 765Right-handed alpha
Helix 18
18
A
788 792Right-handed 310
Helix 19
19
A
824 829Right-handed 310
Helix 20
20
A
830 846Right-handed alpha
Helix 21
21
A
851 855Right-handed 310
Helix 22
22
A
865 869Right-handed 310
Helix 23
23
A
871 886Right-handed alpha
Helix 24
24
A
897 914Right-handed alpha
Helix 25
25
A
917 933Right-handed alpha
Helix 26
26
A
944 956Right-handed alpha
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There are 3 sheets in PDB entry 4N9Y. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
711 714anti-parallel
Strand 3
A
890 893parallel
Strand 4
A
858 861parallel
Strand 5
A
727 732parallel
Strand 6
A
813 818parallel
Strand 7
A
772 777anti-parallel
Strand 8
A
687 694anti-parallel
Strand 9
A
614 619anti-parallel
Strand 10
A
473 475parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
526 527anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 786first strand
Strand 2
A
793 797anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il