Analysis of interatomic Contacts of Structural Units in PDB entry:
4NCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NCJ entry

There are 3 chains in PDB entry 4NCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 882
B
 MET 1SER 882
C
 MET 1THR 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 4NCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 49Right-handed alpha
Helix 2
2
A
57 62Right-handed alpha
Helix 3
3
A
115 127Right-handed alpha
Helix 4
4
A
128 136Right-handed alpha
Helix 5
5
A
144 148Right-handed 310
Helix 6
6
A
149 162Right-handed alpha
Helix 7
7
A
736 760Right-handed alpha
Helix 8
8
A
788 792Right-handed 310
Helix 9
9
A
793 812Right-handed alpha
Helix 10
10
A
829 843Right-handed alpha
Helix 11
11
A
844 847Right-handed 310
Helix 12
12
A
856 863Right-handed 310
Helix 13
13
B
35 49Right-handed alpha
Helix 14
14
B
57 62Right-handed alpha
Helix 15
15
B
115 127Right-handed alpha
Helix 16
16
B
128 136Right-handed alpha
Helix 17
17
B
144 148Right-handed 310
Helix 18
18
B
149 161Right-handed alpha
Helix 19
19
B
737 760Right-handed alpha
Helix 20
20
B
788 792Right-handed 310
Helix 21
21
B
793 812Right-handed alpha
Helix 22
22
B
829 843Right-handed alpha
Helix 23
23
B
844 847Right-handed 310
Helix 24
24
B
856 860Right-handed 310
Helix 25
25
C
35 49Right-handed alpha
Helix 26
26
C
57 62Right-handed alpha
Helix 27
27
C
92 96Right-handed 310
Helix 28
28
C
115 127Right-handed alpha
Helix 29
29
C
128 136Right-handed alpha
Helix 30
30
C
144 149Right-handed alpha
Helix 31
31
C
152 162Right-handed alpha
Helix 32
32
C
727 760Right-handed alpha
Helix 33
33
C
788 792Right-handed 310
Helix 34
34
C
793 812Right-handed alpha
Helix 35
35
C
829 843Right-handed alpha
Helix 36
36
C
844 847Right-handed 310
Helix 37
37
C
856 863Right-handed 310
Helix 38
38
D
35 49Right-handed alpha
Helix 39
39
D
57 62Right-handed alpha
Helix 40
40
D
92 96Right-handed 310
Helix 41
41
D
115 127Right-handed alpha
Helix 42
42
D
128 136Right-handed alpha
Helix 43
43
D
144 149Right-handed alpha
Helix 44
44
D
149 162Right-handed alpha
Helix 45
45
D
727 760Right-handed alpha
Helix 46
46
D
788 792Right-handed 310
Helix 47
47
D
793 812Right-handed alpha
Helix 48
48
D
829 843Right-handed alpha
Helix 49
49
D
844 847Right-handed 310
Helix 50
50
D
856 863Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 4NCJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 20first strand
Strand 2
A
2 11anti-parallel
Strand 3
A
68 77anti-parallel
Strand 4
A
80 89anti-parallel
Strand 5
A
98 104anti-parallel
Strand 6
A
107 110anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
818 821parallel
Strand 3
A
849 854parallel
Strand 4
A
24 29parallel
Strand 5
A
865 872parallel
Strand 6
A
875 880anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 771first strand
Strand 2
A
776 782anti-parallel
Strand 3
A
785 787anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 20first strand
Strand 2
B
2 11anti-parallel
Strand 3
B
68 77anti-parallel
Strand 4
B
80 89anti-parallel
Strand 5
B
92 104anti-parallel
Strand 6
B
107 110anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
818 822parallel
Strand 3
B
849 854parallel
Strand 4
B
24 29parallel
Strand 5
B
865 872parallel
Strand 6
B
875 880anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
766 772first strand
Strand 2
B
775 782anti-parallel
Strand 3
B
785 787anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 20first strand
Strand 2
C
2 11anti-parallel
Strand 3
C
68 77anti-parallel
Strand 4
C
80 89anti-parallel
Strand 5
C
97 104anti-parallel
Strand 6
C
107 110anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 138first strand
Strand 2
C
818 821parallel
Strand 3
C
849 854parallel
Strand 4
C
24 29parallel
Strand 5
C
865 872parallel
Strand 6
C
875 880anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
766 772first strand
Strand 2
C
775 782anti-parallel
Strand 3
C
785 787anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 20first strand
Strand 2
D
2 11anti-parallel
Strand 3
D
68 77anti-parallel
Strand 4
D
80 89anti-parallel
Strand 5
D
97 104anti-parallel
Strand 6
D
107 110anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 138first strand
Strand 2
D
818 821parallel
Strand 3
D
849 854parallel
Strand 4
D
24 29parallel
Strand 5
D
865 872parallel
Strand 6
D
875 882anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
766 772first strand
Strand 2
D
775 782anti-parallel
Strand 3
D
785 787anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il