Analysis of interatomic Contacts of Structural Units in PDB entry:
4NDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NDJ entry

There are 2 chains in PDB entry 4NDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LEU 116
A
 LEU 118THR 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4NDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 34Right-handed alpha
Helix 2
2
A
36 60Right-handed alpha
Helix 3
3
A
89 91Right-handed 310
Helix 4
4
A
108 113Right-handed 310
Helix 5
5
A
118 122Right-handed 310
Helix 6
6
A
125 131Right-handed 310
Helix 7
7
A
132 137Right-handed alpha
Helix 8
8
A
206 209Right-handed 310
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There is 1 sheet ( A) in PDB entry 4NDJ.

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 74first strand
Strand 2
A
77 88anti-parallel
Strand 3
A
93 100anti-parallel
Strand 4
A
267 277anti-parallel
Strand 5
A
249 258anti-parallel
Strand 6
A
198 205anti-parallel
Strand 7
A
210 220anti-parallel
Strand 8
A
226 237anti-parallel
Strand 9
A
142 150anti-parallel
Strand 10
A
155 165anti-parallel
Strand 11
A
168 178anti-parallel
Strand 12
A
64 74parallel
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