Analysis of interatomic Contacts of Structural Units in PDB entry:
4NDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NDZ entry

There are 3 chains in PDB entry 4NDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1069	SER 1355
B	LYS 1	SER 1355
C	LYS 1	PRO 331

There are182 helices in PDB entry 4NDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1085	1098	Right-handed alpha
Helix 2	2	A	1111	1113	Right-handed 310
Helix 3	3	A	1117	1131	Right-handed alpha
Helix 4	4	A	1132	1135	Right-handed 310
Helix 5	5	A	1148	1152	Right-handed 310
Helix 6	6	A	1165	1180	Right-handed alpha
Helix 7	7	A	1197	1204	Right-handed alpha
Helix 8	8	A	1210	1215	Right-handed 310
Helix 9	9	A	1216	1223	Right-handed alpha
Helix 10	10	A	1225	1230	Right-handed 310
Helix 11	11	A	1233	1247	Right-handed alpha
Helix 12	12	A	1256	1268	Right-handed alpha
Helix 13	13	A	1268	1273	Right-handed alpha
Helix 14	14	A	1274	1281	Right-handed alpha
Helix 15	15	A	1297	1305	Right-handed alpha
Helix 16	16	A	1307	1331	Right-handed alpha
Helix 17	17	B	16	32	Right-handed alpha
Helix 18	18	B	49	53	Right-handed 310
Helix 19	19	B	66	73	Right-handed alpha
Helix 20	20	B	82	87	Right-handed alpha
Helix 21	21	B	90	97	Right-handed alpha
Helix 22	22	B	132	143	Right-handed alpha
Helix 23	23	B	153	165	Right-handed alpha
Helix 24	24	B	185	201	Right-handed alpha
Helix 25	25	B	209	219	Right-handed alpha
Helix 26	26	B	228	231	Right-handed 310
Helix 27	27	B	232	237	Right-handed alpha
Helix 28	28	B	272	283	Right-handed alpha
Helix 29	29	B	286	295	Right-handed alpha
Helix 30	30	B	304	312	Right-handed alpha
Helix 31	31	B	314	327	Right-handed alpha
Helix 32	32	B	335	352	Right-handed alpha
Helix 33	33	B	356	368	Right-handed alpha
Helix 34	34	B	1085	1098	Right-handed alpha
Helix 35	35	B	1111	1113	Right-handed 310
Helix 36	36	B	1117	1131	Right-handed alpha
Helix 37	37	B	1132	1135	Right-handed 310
Helix 38	38	B	1147	1152	Right-handed 310
Helix 39	39	B	1165	1180	Right-handed alpha
Helix 40	40	B	1197	1204	Right-handed alpha
Helix 41	41	B	1210	1215	Right-handed 310
Helix 42	42	B	1216	1223	Right-handed alpha
Helix 43	43	B	1225	1229	Right-handed 310
Helix 44	44	B	1233	1247	Right-handed alpha
Helix 45	45	B	1256	1268	Right-handed alpha
Helix 46	46	B	1268	1273	Right-handed alpha
Helix 47	47	B	1274	1281	Right-handed alpha
Helix 48	48	B	1297	1305	Right-handed alpha
Helix 49	49	B	1307	1331	Right-handed alpha
Helix 50	50	C	16	32	Right-handed alpha
Helix 51	51	C	42	53	Right-handed alpha
Helix 52	52	C	66	73	Right-handed alpha
Helix 53	53	C	82	87	Right-handed alpha
Helix 54	54	C	90	96	Right-handed alpha
Helix 55	55	C	132	143	Right-handed alpha
Helix 56	56	C	153	165	Right-handed alpha
Helix 57	57	C	185	201	Right-handed alpha
Helix 58	58	C	209	219	Right-handed alpha
Helix 59	59	C	228	231	Right-handed 310
Helix 60	60	C	232	237	Right-handed alpha
Helix 61	61	C	272	283	Right-handed alpha
Helix 62	62	C	286	295	Right-handed alpha
Helix 63	63	C	304	312	Right-handed alpha
Helix 64	64	C	314	327	Right-handed alpha
Helix 65	65	C	335	352	Right-handed alpha
Helix 66	66	C	356	368	Right-handed alpha
Helix 67	67	C	1085	1098	Right-handed alpha
Helix 68	68	C	1111	1113	Right-handed 310
Helix 69	69	C	1117	1131	Right-handed alpha
Helix 70	70	C	1132	1135	Right-handed 310
Helix 71	71	C	1148	1152	Right-handed 310
Helix 72	72	C	1165	1180	Right-handed alpha
Helix 73	73	C	1197	1204	Right-handed alpha
Helix 74	74	C	1210	1215	Right-handed 310
Helix 75	75	C	1218	1223	Right-handed alpha
Helix 76	76	C	1225	1230	Right-handed 310
Helix 77	77	C	1233	1247	Right-handed alpha
Helix 78	78	C	1256	1268	Right-handed alpha
Helix 79	79	C	1268	1273	Right-handed alpha
Helix 80	80	C	1274	1281	Right-handed alpha
Helix 81	81	C	1297	1305	Right-handed alpha
Helix 82	82	C	1307	1331	Right-handed alpha
Helix 83	83	D	16	32	Right-handed alpha
Helix 84	84	D	42	53	Right-handed alpha
Helix 85	85	D	66	73	Right-handed alpha
Helix 86	86	D	82	87	Right-handed alpha
Helix 87	87	D	90	97	Right-handed alpha
Helix 88	88	D	134	143	Right-handed alpha
Helix 89	89	D	153	165	Right-handed alpha
Helix 90	90	D	185	201	Right-handed alpha
Helix 91	91	D	209	219	Right-handed alpha
Helix 92	92	D	228	231	Right-handed 310
Helix 93	93	D	232	237	Right-handed alpha
Helix 94	94	D	272	283	Right-handed alpha
Helix 95	95	D	286	295	Right-handed alpha
Helix 96	96	D	304	312	Right-handed alpha
Helix 97	97	D	314	327	Right-handed alpha
Helix 98	98	D	335	352	Right-handed alpha
Helix 99	99	D	356	369	Right-handed alpha
Helix 100	100	D	1085	1098	Right-handed alpha
Helix 101	101	D	1111	1113	Right-handed 310
Helix 102	102	D	1117	1131	Right-handed alpha
Helix 103	103	D	1132	1135	Right-handed 310
Helix 104	104	D	1147	1152	Right-handed 310
Helix 105	105	D	1165	1180	Right-handed alpha
Helix 106	106	D	1197	1204	Right-handed alpha
Helix 107	107	D	1210	1215	Right-handed 310
Helix 108	108	D	1216	1223	Right-handed alpha
Helix 109	109	D	1225	1229	Right-handed 310
Helix 110	110	D	1233	1247	Right-handed alpha
Helix 111	111	D	1256	1268	Right-handed alpha
Helix 112	112	D	1268	1273	Right-handed alpha
Helix 113	113	D	1274	1281	Right-handed alpha
Helix 114	114	D	1297	1305	Right-handed alpha
Helix 115	115	D	1307	1330	Right-handed alpha
Helix 116	116	E	16	32	Right-handed alpha
Helix 117	117	E	42	53	Right-handed alpha
Helix 118	118	E	66	73	Right-handed alpha
Helix 119	119	E	82	87	Right-handed alpha
Helix 120	120	E	90	97	Right-handed alpha
Helix 121	121	E	132	143	Right-handed alpha
Helix 122	122	E	153	165	Right-handed alpha
Helix 123	123	E	185	201	Right-handed alpha
Helix 124	124	E	209	219	Right-handed alpha
Helix 125	125	E	228	231	Right-handed 310
Helix 126	126	E	232	237	Right-handed alpha
Helix 127	127	E	272	283	Right-handed alpha
Helix 128	128	E	286	295	Right-handed alpha
Helix 129	129	E	304	312	Right-handed alpha
Helix 130	130	E	314	327	Right-handed alpha
Helix 131	131	E	335	352	Right-handed alpha
Helix 132	132	E	356	368	Right-handed alpha
Helix 133	133	E	1069	1073	Right-handed 310
Helix 134	134	E	1085	1098	Right-handed alpha
Helix 135	135	E	1111	1113	Right-handed 310
Helix 136	136	E	1117	1131	Right-handed alpha
Helix 137	137	E	1132	1135	Right-handed 310
Helix 138	138	E	1148	1152	Right-handed 310
Helix 139	139	E	1165	1180	Right-handed alpha
Helix 140	140	E	1197	1204	Right-handed alpha
Helix 141	141	E	1210	1215	Right-handed 310
Helix 142	142	E	1216	1223	Right-handed alpha
Helix 143	143	E	1225	1230	Right-handed 310
Helix 144	144	E	1233	1247	Right-handed alpha
Helix 145	145	E	1256	1268	Right-handed alpha
Helix 146	146	E	1268	1273	Right-handed alpha
Helix 147	147	E	1274	1281	Right-handed alpha
Helix 148	148	E	1297	1305	Right-handed alpha
Helix 149	149	E	1307	1330	Right-handed alpha
Helix 150	150	F	16	32	Right-handed alpha
Helix 151	151	F	42	53	Right-handed alpha
Helix 152	152	F	66	73	Right-handed alpha
Helix 153	153	F	82	87	Right-handed alpha
Helix 154	154	F	90	97	Right-handed alpha
Helix 155	155	F	134	143	Right-handed alpha
Helix 156	156	F	153	165	Right-handed alpha
Helix 157	157	F	185	201	Right-handed alpha
Helix 158	158	F	209	219	Right-handed alpha
Helix 159	159	F	228	231	Right-handed 310
Helix 160	160	F	232	237	Right-handed alpha
Helix 161	161	F	272	283	Right-handed alpha
Helix 162	162	F	286	295	Right-handed alpha
Helix 163	163	F	304	312	Right-handed alpha
Helix 164	164	F	314	327	Right-handed alpha
Helix 165	165	F	335	352	Right-handed alpha
Helix 166	166	F	356	368	Right-handed alpha
Helix 167	167	F	1085	1098	Right-handed alpha
Helix 168	168	F	1111	1113	Right-handed 310
Helix 169	169	F	1117	1131	Right-handed alpha
Helix 170	170	F	1132	1135	Right-handed 310
Helix 171	171	F	1147	1152	Right-handed 310
Helix 172	172	F	1165	1180	Right-handed alpha
Helix 173	173	F	1197	1204	Right-handed alpha
Helix 174	174	F	1210	1215	Right-handed 310
Helix 175	175	F	1216	1223	Right-handed alpha
Helix 176	176	F	1225	1229	Right-handed 310
Helix 177	177	F	1233	1247	Right-handed alpha
Helix 178	178	F	1256	1268	Right-handed alpha
Helix 179	179	F	1268	1273	Right-handed alpha
Helix 180	180	F	1274	1281	Right-handed alpha
Helix 181	181	F	1297	1305	Right-handed alpha
Helix 182	182	F	1307	1330	Right-handed alpha

There are 37 sheets in PDB entry 4NDZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1248	1253	first strand
Strand 2	A	1158	1163	parallel
Strand 3	A	1075	1078	parallel
Strand 4	A	1137	1140	parallel
Strand 5	A	1103	1109	parallel
Strand 6	B	1346	1352	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1332	1335	first strand
Strand 2	A	1338	1341	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1346	1352	first strand
Strand 2	C	1103	1109	anti-parallel
Strand 3	C	1137	1140	parallel
Strand 4	C	1075	1078	parallel
Strand 5	C	1158	1163	parallel
Strand 6	C	1248	1253	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	105	111	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	242	245	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	253	254	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1248	1253	first strand
Strand 2	B	1158	1163	parallel
Strand 3	B	1075	1078	parallel
Strand 4	B	1137	1140	parallel
Strand 5	B	1103	1109	parallel
Strand 6	C	1346	1352	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1332	1334	first strand
Strand 2	B	1339	1341	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	6	11	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	267	anti-parallel
Strand 5	C	106	111	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	258	267	anti-parallel
Strand 3	C	328	329	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	103	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	227	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	242	245	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	253	254	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1332	1333	first strand
Strand 2	C	1340	1341	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	6	11	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	267	anti-parallel
Strand 5	D	105	111	anti-parallel
Strand 6	D	301	302	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	258	267	anti-parallel
Strand 3	D	328	329	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	227	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	242	245	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	253	254	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1248	1253	first strand
Strand 2	D	1158	1163	parallel
Strand 3	D	1075	1078	parallel
Strand 4	D	1137	1140	parallel
Strand 5	D	1103	1109	parallel
Strand 6	E	1346	1352	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1332	1334	first strand
Strand 2	D	1339	1341	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1346	1352	first strand
Strand 2	F	1103	1109	anti-parallel
Strand 3	F	1137	1140	parallel
Strand 4	F	1075	1078	parallel
Strand 5	F	1158	1163	parallel
Strand 6	F	1248	1253	parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	6	11	parallel
Strand 3	E	59	63	parallel
Strand 4	E	258	266	anti-parallel
Strand 5	E	106	111	anti-parallel
Strand 6	E	301	302	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	6	11	parallel
Strand 3	E	59	63	parallel
Strand 4	E	258	266	anti-parallel
Strand 5	E	328	329	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	102	103	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	227	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	242	245	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	250	first strand
Strand 2	E	253	254	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1248	1253	first strand
Strand 2	E	1158	1163	parallel
Strand 3	E	1075	1078	parallel
Strand 4	E	1137	1140	parallel
Strand 5	E	1103	1109	parallel
Strand 6	F	1346	1352	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1332	1334	first strand
Strand 2	E	1339	1341	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	6	11	parallel
Strand 3	F	59	63	parallel
Strand 4	F	258	267	anti-parallel
Strand 5	F	105	111	anti-parallel
Strand 6	F	301	302	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	77	first strand
Strand 2	F	258	267	anti-parallel
Strand 3	F	328	329	parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	102	103	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	227	first strand
Strand 2	F	114	118	anti-parallel
Strand 3	F	242	245	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	250	first strand
Strand 2	F	253	254	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1332	1334	first strand
Strand 2	F	1339	1341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NDZ