Analysis of interatomic Contacts of Structural Units in PDB entry:
4NE0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NE0 entry

There are 4 chains in PDB entry 4NE0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	GLY 344
B	THR 9	GLY 344
C	THR 9	GLY 344
D	THR 9	GLY 344

There are 51 helices in PDB entry 4NE0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	33	Right-handed alpha
Helix 2	2	A	38	50	Right-handed alpha
Helix 3	3	A	53	67	Right-handed alpha
Helix 4	4	A	80	85	Right-handed alpha
Helix 5	5	A	100	115	Right-handed alpha
Helix 6	6	A	123	127	Right-handed 310
Helix 7	7	A	135	139	Right-handed 310
Helix 8	8	A	186	190	Right-handed 310
Helix 9	9	A	191	200	Right-handed alpha
Helix 10	10	A	208	216	Right-handed 310
Helix 11	11	A	220	226	Right-handed alpha
Helix 12	12	A	227	237	Right-handed alpha
Helix 13	13	A	255	257	Right-handed 310
Helix 14	14	A	265	283	Right-handed alpha
Helix 15	15	A	327	335	Right-handed 310
Helix 16	16	B	15	33	Right-handed alpha
Helix 17	17	B	38	50	Right-handed alpha
Helix 18	18	B	53	67	Right-handed alpha
Helix 19	19	B	80	85	Right-handed alpha
Helix 20	20	B	100	115	Right-handed alpha
Helix 21	21	B	123	127	Right-handed 310
Helix 22	22	B	186	190	Right-handed 310
Helix 23	23	B	191	199	Right-handed alpha
Helix 24	24	B	255	257	Right-handed 310
Helix 25	25	B	265	283	Right-handed alpha
Helix 26	26	B	327	335	Right-handed 310
Helix 27	27	C	15	33	Right-handed alpha
Helix 28	28	C	38	50	Right-handed alpha
Helix 29	29	C	53	67	Right-handed alpha
Helix 30	30	C	80	85	Right-handed alpha
Helix 31	31	C	100	115	Right-handed alpha
Helix 32	32	C	123	127	Right-handed 310
Helix 33	33	C	135	139	Right-handed 310
Helix 34	34	C	191	199	Right-handed alpha
Helix 35	35	C	208	212	Right-handed 310
Helix 36	36	C	232	237	Right-handed alpha
Helix 37	37	C	255	257	Right-handed 310
Helix 38	38	C	265	283	Right-handed alpha
Helix 39	39	C	327	335	Right-handed 310
Helix 40	40	D	15	33	Right-handed alpha
Helix 41	41	D	38	50	Right-handed alpha
Helix 42	42	D	53	67	Right-handed alpha
Helix 43	43	D	80	85	Right-handed alpha
Helix 44	44	D	100	115	Right-handed alpha
Helix 45	45	D	123	127	Right-handed 310
Helix 46	46	D	135	139	Right-handed 310
Helix 47	47	D	186	190	Right-handed 310
Helix 48	48	D	191	199	Right-handed alpha
Helix 49	49	D	255	257	Right-handed 310
Helix 50	50	D	265	283	Right-handed alpha
Helix 51	51	D	327	335	Right-handed 310

There are 20 sheets in PDB entry 4NE0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	71	75	parallel
Strand 3	A	293	297	anti-parallel
Strand 4	A	166	173	anti-parallel
Strand 5	A	318	325	anti-parallel
Strand 6	A	129	132	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	71	75	parallel
Strand 3	A	293	297	anti-parallel
Strand 4	A	166	173	anti-parallel
Strand 5	A	318	325	anti-parallel
Strand 6	A	116	120	anti-parallel
Strand 7	A	342	343	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	301	305	anti-parallel
Strand 3	A	180	184	anti-parallel
Strand 4	A	284	286	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	259	260	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	249	252	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	71	75	parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	166	173	anti-parallel
Strand 5	B	318	325	anti-parallel
Strand 6	B	130	132	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	71	75	parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	166	173	anti-parallel
Strand 5	B	318	325	anti-parallel
Strand 6	B	116	120	anti-parallel
Strand 7	B	342	343	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	179	183	anti-parallel
Strand 3	B	302	305	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	259	260	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	251	252	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	71	75	parallel
Strand 3	C	293	297	anti-parallel
Strand 4	C	166	173	anti-parallel
Strand 5	C	318	325	anti-parallel
Strand 6	C	129	132	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	71	75	parallel
Strand 3	C	293	297	anti-parallel
Strand 4	C	166	173	anti-parallel
Strand 5	C	318	325	anti-parallel
Strand 6	C	116	120	anti-parallel
Strand 7	C	342	343	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	302	305	anti-parallel
Strand 3	C	179	183	anti-parallel
Strand 4	C	284	287	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	259	260	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	251	252	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	71	75	parallel
Strand 3	D	293	297	anti-parallel
Strand 4	D	166	173	anti-parallel
Strand 5	D	318	325	anti-parallel
Strand 6	D	129	132	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	71	75	parallel
Strand 3	D	293	297	anti-parallel
Strand 4	D	166	173	anti-parallel
Strand 5	D	318	325	anti-parallel
Strand 6	D	116	120	anti-parallel
Strand 7	D	342	343	parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	302	305	anti-parallel
Strand 3	D	180	183	anti-parallel
Strand 4	D	284	286	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	205	first strand
Strand 2	D	259	260	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	246	first strand
Strand 2	D	249	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NE0

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NE0