Analysis of interatomic Contacts of Structural Units in PDB entry:
4NE7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NE7 entry

There is 1 chain in PDB entry 4NE7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3SER 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4NE7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
74 90Right-handed alpha
Helix 4
4
A
103 116Right-handed alpha
Helix 5
5
A
134 136Right-handed 310
Helix 6
6
A
137 154Right-handed alpha
Helix 7
7
A
228 235Right-handed 310
Helix 8
8
A
258 262Right-handed 310
Helix 9
9
A
276 278Right-handed 310
Helix 10
10
A
279 296Right-handed alpha
Helix 11
11
A
302 307Right-handed alpha
Helix 12
12
A
308 309Right-handed 310
Helix 13
13
A
310 312Right-handed 310
Helix 14
14
A
347 356Right-handed alpha
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There are 6 sheets in PDB entry 4NE7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
94 99parallel
Strand 3
A
27 32parallel
Strand 4
A
124 127parallel
Strand 5
A
157 161parallel
Strand 6
A
188 197parallel
Strand 7
A
202 207anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
94 99parallel
Strand 3
A
27 32parallel
Strand 4
A
124 127parallel
Strand 5
A
157 161parallel
Strand 6
A
188 197parallel
Strand 7
A
253 256parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
179 180anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
249 250anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
270 274anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
345 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il