Analysis of interatomic Contacts of Structural Units in PDB entry:
4NE9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NE9 entry

There are 5 chains in PDB entry 4NE9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 153	ARG 682
B	SER 153	ARG 682
C	THR 61	GLN 152
D	GLY 1	LEU 26
P	THR 61	GLN 152

There are 29 helices in PDB entry 4NE9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	155	162	Right-handed alpha
Helix 2	2	A	214	221	Right-handed alpha
Helix 3	3	A	224	236	Right-handed alpha
Helix 4	4	A	261	278	Right-handed alpha
Helix 5	5	A	294	307	Right-handed alpha
Helix 6	6	A	321	323	Right-handed 310
Helix 7	7	A	384	403	Right-handed alpha
Helix 8	8	A	407	418	Right-handed alpha
Helix 9	9	A	425	429	Right-handed 310
Helix 10	10	A	430	434	Right-handed 310
Helix 11	11	B	155	162	Right-handed alpha
Helix 12	12	B	220	224	Right-handed alpha
Helix 13	13	B	224	236	Right-handed alpha
Helix 14	14	B	261	278	Right-handed alpha
Helix 15	15	B	294	307	Right-handed alpha
Helix 16	16	B	321	323	Right-handed 310
Helix 17	17	B	384	403	Right-handed alpha
Helix 18	18	B	407	418	Right-handed alpha
Helix 19	19	B	425	429	Right-handed 310
Helix 20	20	B	430	434	Right-handed 310
Helix 21	21	C	69	71	Right-handed 310
Helix 22	22	C	87	104	Right-handed alpha
Helix 23	23	C	127	129	Right-handed 310
Helix 24	24	C	130	136	Right-handed alpha
Helix 25	25	D	3	12	Right-handed 310
Helix 26	26	P	69	71	Right-handed 310
Helix 27	27	P	87	105	Right-handed alpha
Helix 28	28	P	127	129	Right-handed 310
Helix 29	29	P	130	136	Right-handed alpha

There are 24 sheets in PDB entry 4NE9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	206	first strand
Strand 2	A	246	251	parallel
Strand 3	A	181	186	parallel
Strand 4	A	283	287	parallel
Strand 5	A	310	314	parallel
Strand 6	A	334	339	parallel
Strand 7	A	361	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	P	140	151	anti-parallel
Strand 3	P	63	65	parallel

Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	326	first strand
Strand 2	A	289	292	anti-parallel
Strand 3	P	140	151	anti-parallel
Strand 4	P	73	82	anti-parallel
Strand 5	P	121	125	anti-parallel
Strand 6	P	110	115	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	351	352	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	371	first strand
Strand 2	A	379	382	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	440	441	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	461	first strand
Strand 2	A	521	528	anti-parallel
Strand 3	A	482	489	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	A	507	513	anti-parallel
Strand 3	A	495	502	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	539	first strand
Strand 2	A	595	602	anti-parallel
Strand 3	A	557	565	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	551	first strand
Strand 2	A	587	590	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	615	first strand
Strand 2	A	672	681	anti-parallel
Strand 3	A	631	637	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	625	first strand
Strand 2	A	653	658	anti-parallel
Strand 3	A	644	650	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	206	first strand
Strand 2	B	247	251	parallel
Strand 3	B	181	186	parallel
Strand 4	B	283	287	parallel
Strand 5	B	310	314	parallel
Strand 6	B	334	339	parallel
Strand 7	B	361	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	260	first strand
Strand 2	C	140	151	anti-parallel
Strand 3	C	63	65	parallel

Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	289	292	anti-parallel
Strand 3	C	140	151	anti-parallel
Strand 4	C	73	82	anti-parallel
Strand 5	C	121	125	anti-parallel
Strand 6	C	110	115	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	351	352	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	371	first strand
Strand 2	B	378	382	anti-parallel
Strand 3	D	15	18	anti-parallel
Strand 4	D	23	26	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	421	first strand
Strand 2	B	440	441	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	461	first strand
Strand 2	B	521	528	anti-parallel
Strand 3	B	482	489	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	B	506	513	anti-parallel
Strand 3	B	495	503	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	539	first strand
Strand 2	B	595	602	anti-parallel
Strand 3	B	557	565	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	551	first strand
Strand 2	B	587	590	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	615	first strand
Strand 2	B	672	681	anti-parallel
Strand 3	B	631	637	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	625	first strand
Strand 2	B	653	658	anti-parallel
Strand 3	B	644	650	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NE9

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NE9