Analysis of interatomic Contacts of Structural Units in PDB entry:
4NEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NEE entry

There are 6 chains in PDB entry 4NEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	GLU 142
L	MET 1	GLU 142
F	MET 1	GLU 142
I	MET 1	GLU 142
G	GLY 9	MET 396
B	GLY 9	LEU 284

There are147 helices in PDB entry 4NEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	24	42	Right-handed alpha
Helix 2	2	D	76	96	Right-handed alpha
Helix 3	3	D	99	106	Right-handed alpha
Helix 4	4	D	106	117	Right-handed alpha
Helix 5	5	D	127	141	Right-handed alpha
Helix 6	6	L	24	42	Right-handed alpha
Helix 7	7	L	76	96	Right-handed alpha
Helix 8	8	L	99	106	Right-handed alpha
Helix 9	9	L	106	117	Right-handed alpha
Helix 10	10	L	127	141	Right-handed alpha
Helix 11	11	F	24	42	Right-handed alpha
Helix 12	12	F	76	96	Right-handed alpha
Helix 13	13	F	99	106	Right-handed alpha
Helix 14	14	F	106	117	Right-handed alpha
Helix 15	15	F	127	141	Right-handed alpha
Helix 16	16	I	24	42	Right-handed alpha
Helix 17	17	I	76	96	Right-handed alpha
Helix 18	18	I	99	106	Right-handed alpha
Helix 19	19	I	106	117	Right-handed alpha
Helix 20	20	I	127	141	Right-handed alpha
Helix 21	21	G	10	23	Right-handed alpha
Helix 22	22	G	25	46	Right-handed alpha
Helix 23	23	G	51	68	Right-handed alpha
Helix 24	24	G	75	84	Right-handed alpha
Helix 25	25	G	87	101	Right-handed alpha
Helix 26	26	G	105	122	Right-handed alpha
Helix 27	27	G	124	139	Right-handed alpha
Helix 28	28	G	140	148	Right-handed alpha
Helix 29	29	G	149	157	Right-handed alpha
Helix 30	30	G	161	179	Right-handed alpha
Helix 31	31	G	187	194	Right-handed alpha
Helix 32	32	G	195	198	Right-handed 310
Helix 33	33	G	200	218	Right-handed alpha
Helix 34	34	G	219	222	Right-handed 310
Helix 35	35	G	223	238	Right-handed alpha
Helix 36	36	G	242	246	Right-handed 310
Helix 37	37	G	254	266	Right-handed alpha
Helix 38	38	G	273	293	Right-handed alpha
Helix 39	39	G	299	321	Right-handed alpha
Helix 40	40	G	323	339	Right-handed alpha
Helix 41	41	G	342	359	Right-handed alpha
Helix 42	42	G	362	367	Right-handed alpha
Helix 43	43	G	369	380	Right-handed alpha
Helix 44	44	G	382	396	Right-handed alpha
Helix 45	45	B	10	23	Right-handed alpha
Helix 46	46	B	25	45	Right-handed alpha
Helix 47	47	B	51	68	Right-handed alpha
Helix 48	48	B	75	85	Right-handed alpha
Helix 49	49	B	87	101	Right-handed alpha
Helix 50	50	B	105	122	Right-handed alpha
Helix 51	51	B	124	139	Right-handed alpha
Helix 52	52	B	140	148	Right-handed alpha
Helix 53	53	B	149	157	Right-handed alpha
Helix 54	54	B	161	179	Right-handed alpha
Helix 55	55	B	180	183	Right-handed 310
Helix 56	56	B	187	195	Right-handed alpha
Helix 57	57	B	196	198	Right-handed 310
Helix 58	58	B	200	218	Right-handed alpha
Helix 59	59	B	219	222	Right-handed 310
Helix 60	60	B	223	238	Right-handed alpha
Helix 61	61	B	244	246	Right-handed 310
Helix 62	62	B	254	266	Right-handed alpha
Helix 63	63	B	273	293	Right-handed alpha
Helix 64	64	B	299	321	Right-handed alpha
Helix 65	65	B	323	339	Right-handed alpha
Helix 66	66	B	342	357	Right-handed alpha
Helix 67	67	B	362	367	Right-handed alpha
Helix 68	68	B	369	380	Right-handed alpha
Helix 69	69	B	382	396	Right-handed alpha
Helix 70	70	J	10	22	Right-handed alpha
Helix 71	71	J	25	46	Right-handed alpha
Helix 72	72	J	51	69	Right-handed alpha
Helix 73	73	J	75	84	Right-handed alpha
Helix 74	74	J	87	101	Right-handed alpha
Helix 75	75	J	105	122	Right-handed alpha
Helix 76	76	J	124	139	Right-handed alpha
Helix 77	77	J	140	148	Right-handed alpha
Helix 78	78	J	149	157	Right-handed alpha
Helix 79	79	J	161	179	Right-handed alpha
Helix 80	80	J	180	183	Right-handed 310
Helix 81	81	J	187	194	Right-handed alpha
Helix 82	82	J	195	198	Right-handed 310
Helix 83	83	J	200	218	Right-handed alpha
Helix 84	84	J	219	222	Right-handed 310
Helix 85	85	J	223	239	Right-handed alpha
Helix 86	86	J	244	246	Right-handed 310
Helix 87	87	J	254	266	Right-handed alpha
Helix 88	88	J	273	293	Right-handed alpha
Helix 89	89	J	299	321	Right-handed alpha
Helix 90	90	J	323	339	Right-handed alpha
Helix 91	91	J	342	357	Right-handed alpha
Helix 92	92	J	362	367	Right-handed alpha
Helix 93	93	J	369	380	Right-handed alpha
Helix 94	94	J	382	396	Right-handed alpha
Helix 95	95	A	10	22	Right-handed alpha
Helix 96	96	A	25	45	Right-handed alpha
Helix 97	97	A	51	68	Right-handed alpha
Helix 98	98	A	75	85	Right-handed alpha
Helix 99	99	A	87	101	Right-handed alpha
Helix 100	100	A	105	122	Right-handed alpha
Helix 101	101	A	126	139	Right-handed alpha
Helix 102	102	A	140	148	Right-handed alpha
Helix 103	103	A	149	157	Right-handed alpha
Helix 104	104	A	161	179	Right-handed alpha
Helix 105	105	A	187	196	Right-handed alpha
Helix 106	106	A	200	218	Right-handed alpha
Helix 107	107	A	219	222	Right-handed 310
Helix 108	108	A	223	239	Right-handed alpha
Helix 109	109	A	254	266	Right-handed alpha
Helix 110	110	A	273	293	Right-handed alpha
Helix 111	111	A	299	321	Right-handed alpha
Helix 112	112	A	323	339	Right-handed alpha
Helix 113	113	A	342	357	Right-handed alpha
Helix 114	114	A	362	368	Right-handed alpha
Helix 115	115	A	369	380	Right-handed alpha
Helix 116	116	A	382	396	Right-handed alpha
Helix 117	117	E	56	61	Right-handed alpha
Helix 118	118	E	80	95	Right-handed alpha
Helix 119	119	E	103	119	Right-handed alpha
Helix 120	120	E	149	158	Right-handed alpha
Helix 121	121	E	166	171	Right-handed 310
Helix 122	122	E	187	192	Right-handed alpha
Helix 123	123	E	193	199	Right-handed alpha
Helix 124	124	E	200	203	Right-handed 310
Helix 125	125	H	57	65	Right-handed alpha
Helix 126	126	H	80	94	Right-handed alpha
Helix 127	127	H	103	119	Right-handed alpha
Helix 128	128	H	149	157	Right-handed alpha
Helix 129	129	H	166	171	Right-handed 310
Helix 130	130	H	187	192	Right-handed alpha
Helix 131	131	H	193	199	Right-handed alpha
Helix 132	132	H	200	203	Right-handed 310
Helix 133	133	K	56	65	Right-handed alpha
Helix 134	134	K	80	94	Right-handed alpha
Helix 135	135	K	103	119	Right-handed alpha
Helix 136	136	K	149	157	Right-handed alpha
Helix 137	137	K	166	171	Right-handed 310
Helix 138	138	K	187	191	Right-handed 310
Helix 139	139	K	193	199	Right-handed alpha
Helix 140	140	K	200	203	Right-handed 310
Helix 141	141	C	56	61	Right-handed alpha
Helix 142	142	C	80	94	Right-handed alpha
Helix 143	143	C	103	119	Right-handed alpha
Helix 144	144	C	149	157	Right-handed alpha
Helix 145	145	C	187	192	Right-handed alpha
Helix 146	146	C	193	199	Right-handed alpha
Helix 147	147	C	200	203	Right-handed 310

There are 16 sheets in PDB entry 4NEE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	19	first strand
Strand 2	D	2	9	anti-parallel
Strand 3	D	65	72	anti-parallel
Strand 4	D	55	62	anti-parallel
Strand 5	D	49	51	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	122	123	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	14	19	first strand
Strand 2	L	2	9	anti-parallel
Strand 3	L	65	71	anti-parallel
Strand 4	L	56	62	anti-parallel
Strand 5	L	49	51	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	119	first strand
Strand 2	L	122	123	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	19	first strand
Strand 2	F	2	9	anti-parallel
Strand 3	F	65	72	anti-parallel
Strand 4	F	55	62	anti-parallel
Strand 5	F	49	51	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	122	123	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	19	first strand
Strand 2	I	2	9	anti-parallel
Strand 3	I	65	72	anti-parallel
Strand 4	I	55	62	anti-parallel
Strand 5	I	49	52	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	119	first strand
Strand 2	I	122	123	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	249	first strand
Strand 2	G	252	253	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	252	253	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	248	249	first strand
Strand 2	J	252	253	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	252	253	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	147	first strand
Strand 2	E	181	185	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	147	first strand
Strand 2	H	181	185	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	143	147	first strand
Strand 2	K	181	185	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	181	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NEE