Analysis of interatomic Contacts of Structural Units in PDB entry:
4NET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NET entry

There are 2 chains in PDB entry 4NET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LYS 361
B
 ASN 3LYS 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 4NET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 18Right-handed alpha
Helix 2
2
A
19 25Right-handed alpha
Helix 3
3
A
67 82Right-handed alpha
Helix 4
4
A
90 94Right-handed 310
Helix 5
5
A
95 99Right-handed 310
Helix 6
6
A
101 106Right-handed 310
Helix 7
7
A
107 113Right-handed alpha
Helix 8
8
A
129 140Right-handed alpha
Helix 9
9
A
153 168Right-handed alpha
Helix 10
10
A
171 179Right-handed alpha
Helix 11
11
A
179 184Right-handed alpha
Helix 12
12
A
194 201Right-handed 310
Helix 13
13
A
220 225Right-handed alpha
Helix 14
14
A
230 242Right-handed alpha
Helix 15
15
A
243 246Right-handed 310
Helix 16
16
A
247 258Right-handed alpha
Helix 17
17
A
281 289Right-handed alpha
Helix 18
18
A
290 296Right-handed alpha
Helix 19
19
A
329 331Right-handed 310
Helix 20
20
A
344 359Right-handed alpha
Helix 21
21
B
4 18Right-handed alpha
Helix 22
22
B
18 26Right-handed alpha
Helix 23
23
B
67 82Right-handed alpha
Helix 24
24
B
90 94Right-handed 310
Helix 25
25
B
95 99Right-handed 310
Helix 26
26
B
101 106Right-handed 310
Helix 27
27
B
107 113Right-handed alpha
Helix 28
28
B
129 139Right-handed alpha
Helix 29
29
B
153 168Right-handed alpha
Helix 30
30
B
171 179Right-handed alpha
Helix 31
31
B
179 184Right-handed alpha
Helix 32
32
B
194 201Right-handed 310
Helix 33
33
B
220 225Right-handed alpha
Helix 34
34
B
229 242Right-handed alpha
Helix 35
35
B
243 246Right-handed 310
Helix 36
36
B
247 258Right-handed alpha
Helix 37
37
B
281 288Right-handed alpha
Helix 38
38
B
290 296Right-handed alpha
Helix 39
39
B
329 331Right-handed 310
Helix 40
40
B
344 359Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 4NET. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
39 49anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
333 339anti-parallel
Strand 5
A
323 328anti-parallel
Strand 6
A
310 315anti-parallel
Strand 7
A
274 277anti-parallel
Strand 8
A
267 269anti-parallel
Strand 9
A
262 264anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
298 299anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 46first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
333 339anti-parallel
Strand 4
B
322 328anti-parallel
Strand 5
B
310 317anti-parallel
Strand 6
B
274 277anti-parallel
Strand 7
B
267 269anti-parallel
Strand 8
B
262 264anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
227 228anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
298 299anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il