Analysis of interatomic Contacts of Structural Units in PDB entry:
4NEW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NEW entry

There is 1 chain in PDB entry 4NEW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 6PRO 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4NEW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 29Right-handed alpha
Helix 2
2
A
51 57Right-handed alpha
Helix 3
3
A
57 77Right-handed alpha
Helix 4
4
A
78 81Right-handed 310
Helix 5
5
A
92 118Right-handed alpha
Helix 6
6
A
172 176Right-handed 310
Helix 7
7
A
178 183Right-handed alpha
Helix 8
8
A
198 211Right-handed alpha
Helix 9
9
A
232 246Right-handed alpha
Helix 10
10
A
326 330Right-handed 310
Helix 11
11
A
334 351Right-handed alpha
Helix 12
12
A
378 386Right-handed alpha
Helix 13
13
A
398 403Right-handed alpha
Helix 14
14
A
433 447Right-handed alpha
Helix 15
15
A
450 456Right-handed alpha
Helix 16
16
A
464 470Right-handed 310
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There are 7 sheets in PDB entry 4NEW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
32 36parallel
Strand 3
A
8 11parallel
Strand 4
A
157 159parallel
Strand 5
A
322 324parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 132first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
150 153anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
288 290anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
217 222parallel
Strand 3
A
191 195parallel
Strand 4
A
281 284parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 261first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
276 279anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
308 309anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
424 430anti-parallel
Strand 4
A
411 418anti-parallel
Strand 5
A
388 396anti-parallel
Strand 6
A
476 479anti-parallel
Strand 7
A
482 484anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il