Analysis of interatomic Contacts of Structural Units in PDB entry:
4NGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NGD entry

There are 2 chains in PDB entry 4NGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 756CYS 1053
B
 G 1 U 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4NGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
772 776Right-handed 310
Helix 2
2
A
784 788Right-handed 310
Helix 3
3
A
829 846Right-handed alpha
Helix 4
4
A
883 893Right-handed alpha
Helix 5
5
A
913 918Right-handed 310
Helix 6
6
A
957 967Right-handed alpha
Helix 7
7
A
1005 1021Right-handed alpha
Helix 8
8
A
1024 1026Right-handed 310
Helix 9
9
A
1034 1042Right-handed alpha
Helix 10
10
A
1043 1052Right-handed alpha
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There are 2 sheets in PDB entry 4NGD. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 810first strand
Strand 2
A
813 826anti-parallel
Strand 3
A
758 770anti-parallel
Strand 4
A
791 796anti-parallel
Strand 5
A
867 873anti-parallel
Strand 6
A
880 882anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1023first strand
Strand 2
A
977 982anti-parallel
Strand 3
A
935 941anti-parallel
Strand 4
A
921 924anti-parallel
Strand 5
A
1028 1030anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il