Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4NIB entry
There are 4 chains in PDB entry 4NIB
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
GLY 1 | ASN 21 |
B
|
PHE 1 | CYS 19 |
B
|
GLU 21 | ARG 22 |
B
|
PHE 24 | THR 30 |
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There are 4
helices in PDB entry 4NIB. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
1 | A
| 1 |
7 | Right-handed alpha |
| Helix 2 |
2 | A
| 12 |
18 | Right-handed alpha |
| Helix 3 |
3 | B
| 8 |
20 | Right-handed alpha |
| Helix 4 |
4 | B
| 21 |
23 | Right-handed 310 |
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There are no sheets in PDB entry
4NIB
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il