Analysis of interatomic Contacts of Structural Units in PDB entry:
4NIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NIM entry

There is 1 chain in PDB entry 4NIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4NIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
41 55Right-handed alpha
Helix 3
3
A
68 84Right-handed alpha
Helix 4
4
A
105 117Right-handed alpha
Helix 5
5
A
117 135Right-handed alpha
Helix 6
6
A
147 150Right-handed 310
Helix 7
7
A
152 154Right-handed 310
Helix 8
8
A
155 176Right-handed alpha
Helix 9
9
A
177 180Right-handed 310
Helix 10
10
A
225 238Right-handed alpha
Helix 11
11
A
239 242Right-handed 310
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There is 1 sheet ( A) in PDB entry 4NIM.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
34 39parallel
Strand 3
A
9 12parallel
Strand 4
A
88 91parallel
Strand 5
A
139 145parallel
Strand 6
A
182 188parallel
Strand 7
A
248 251parallel
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