Analysis of interatomic Contacts of Structural Units in PDB entry:
4NJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NJ5 entry

There is 1 chain in PDB entry 4NJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 138GLY 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4NJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
139 168Right-handed alpha
Helix 2
2
A
177 193Right-handed alpha
Helix 3
3
A
218 225Right-handed alpha
Helix 4
4
A
290 302Right-handed alpha
Helix 5
5
A
359 373Right-handed alpha
Helix 6
6
A
374 377Right-handed 310
Helix 7
7
A
406 411Right-handed 310
Helix 8
8
A
444 450Right-handed alpha
Helix 9
9
A
486 490Right-handed 310
Helix 10
10
A
528 538Right-handed alpha
Helix 11
11
A
544 548Right-handed 310
Helix 12
12
A
550 554Right-handed 310
Helix 13
13
A
588 593Right-handed 310
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There are 7 sheets in PDB entry 4NJ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
322 338anti-parallel
Strand 3
A
306 312anti-parallel
Strand 4
A
249 256parallel
Strand 5
A
235 238anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
322 338anti-parallel
Strand 3
A
344 352anti-parallel
Strand 4
A
268 272anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
396 399anti-parallel
Strand 3
A
495 499parallel
Strand 4
A
505 509anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
586 587parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
601 607parallel
Strand 3
A
617 622anti-parallel
Strand 4
A
518 521anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
580 582anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 595first strand
Strand 2
A
633 634parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il