Analysis of interatomic Contacts of Structural Units in PDB entry:
4NJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NJ6 entry

There are 15 chains in PDB entry 4NJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1039	MET 1126
B	ARG 1038	MET 1126
C	ARG 1038	MET 1126
D	THR 1039	MET 1126
E	TYR 1040	GLN 1125
F	THR 1039	SER 1127
G	THR 1039	MET 1126
H	THR 1039	MET 1126
I	ARG 1038	GLN 1125
J	THR 1039	GLN 1124
K	ARG 1038	MET 1126
L	THR 1039	MET 1126
M	ARG 1038	GLN 1125
N	THR 1039	MET 1126
O	TYR 1040	GLU 1063

There are 67 helices in PDB entry 4NJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1054	1058	Right-handed 310
Helix 2	2	A	1060	1072	Right-handed alpha
Helix 3	3	A	1104	1112	Right-handed alpha
Helix 4	4	A	1119	1125	Right-handed alpha
Helix 5	5	B	1054	1058	Right-handed 310
Helix 6	6	B	1060	1072	Right-handed alpha
Helix 7	7	B	1080	1084	Right-handed 310
Helix 8	8	B	1104	1111	Right-handed alpha
Helix 9	9	B	1120	1126	Right-handed alpha
Helix 10	10	C	1054	1058	Right-handed 310
Helix 11	11	C	1060	1072	Right-handed alpha
Helix 12	12	C	1104	1112	Right-handed alpha
Helix 13	13	C	1119	1126	Right-handed alpha
Helix 14	14	D	1054	1058	Right-handed 310
Helix 15	15	D	1060	1072	Right-handed alpha
Helix 16	16	D	1104	1110	Right-handed alpha
Helix 17	17	D	1120	1125	Right-handed alpha
Helix 18	18	E	1054	1058	Right-handed 310
Helix 19	19	E	1060	1072	Right-handed alpha
Helix 20	20	E	1104	1112	Right-handed alpha
Helix 21	21	E	1119	1124	Right-handed alpha
Helix 22	22	F	1054	1058	Right-handed 310
Helix 23	23	F	1060	1072	Right-handed alpha
Helix 24	24	F	1104	1112	Right-handed alpha
Helix 25	25	F	1119	1126	Right-handed alpha
Helix 26	26	G	1054	1058	Right-handed 310
Helix 27	27	G	1060	1072	Right-handed alpha
Helix 28	28	G	1104	1112	Right-handed alpha
Helix 29	29	G	1120	1126	Right-handed alpha
Helix 30	30	H	1054	1058	Right-handed 310
Helix 31	31	H	1060	1072	Right-handed alpha
Helix 32	32	H	1104	1112	Right-handed alpha
Helix 33	33	H	1119	1126	Right-handed alpha
Helix 34	34	I	1054	1058	Right-handed 310
Helix 35	35	I	1060	1072	Right-handed alpha
Helix 36	36	I	1104	1112	Right-handed alpha
Helix 37	37	I	1120	1124	Right-handed alpha
Helix 38	38	J	1054	1058	Right-handed 310
Helix 39	39	J	1060	1072	Right-handed alpha
Helix 40	40	J	1104	1112	Right-handed alpha
Helix 41	41	J	1120	1124	Right-handed alpha
Helix 42	42	K	1054	1058	Right-handed 310
Helix 43	43	K	1060	1072	Right-handed alpha
Helix 44	44	K	1104	1112	Right-handed alpha
Helix 45	45	K	1120	1125	Right-handed alpha
Helix 46	46	L	1054	1058	Right-handed 310
Helix 47	47	L	1060	1072	Right-handed alpha
Helix 48	48	L	1104	1112	Right-handed alpha
Helix 49	49	L	1120	1125	Right-handed alpha
Helix 50	50	M	1054	1058	Right-handed 310
Helix 51	51	M	1060	1072	Right-handed alpha
Helix 52	52	M	1080	1085	Right-handed alpha
Helix 53	53	M	1104	1112	Right-handed alpha
Helix 54	54	M	1119	1124	Right-handed alpha
Helix 55	55	N	1054	1058	Right-handed 310
Helix 56	56	N	1060	1072	Right-handed alpha
Helix 57	57	N	1104	1112	Right-handed alpha
Helix 58	58	N	1119	1124	Right-handed alpha
Helix 59	59	O	1054	1058	Right-handed 310
Helix 60	60	O	1060	1072	Right-handed alpha
Helix 61	61	O	1080	1084	Right-handed 310
Helix 62	62	O	1104	1112	Right-handed alpha
Helix 63	63	O	1119	1126	Right-handed alpha
Helix 64	64	P	1054	1058	Right-handed 310
Helix 65	65	P	1060	1072	Right-handed alpha
Helix 66	66	P	1104	1112	Right-handed alpha
Helix 67	67	P	1120	1125	Right-handed alpha

There are 16 sheets in PDB entry 4NJ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1051	1053	first strand
Strand 2	A	1041	1045	anti-parallel
Strand 3	A	1114	1118	parallel
Strand 4	A	1087	1092	anti-parallel
Strand 5	A	1096	1099	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1051	1053	first strand
Strand 2	B	1041	1045	anti-parallel
Strand 3	B	1112	1119	parallel
Strand 4	B	1086	1092	anti-parallel
Strand 5	B	1097	1099	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1051	1053	first strand
Strand 2	C	1041	1045	anti-parallel
Strand 3	C	1114	1118	parallel
Strand 4	C	1087	1091	anti-parallel
Strand 5	C	1097	1099	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1051	1053	first strand
Strand 2	D	1041	1045	anti-parallel
Strand 3	D	1114	1119	parallel
Strand 4	D	1086	1091	anti-parallel
Strand 5	D	1097	1099	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1051	1053	first strand
Strand 2	E	1041	1044	anti-parallel
Strand 3	E	1114	1118	parallel
Strand 4	E	1087	1091	anti-parallel
Strand 5	E	1097	1099	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1051	1053	first strand
Strand 2	F	1041	1045	anti-parallel
Strand 3	F	1114	1118	parallel
Strand 4	F	1087	1091	anti-parallel
Strand 5	F	1097	1099	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1051	1053	first strand
Strand 2	G	1041	1045	anti-parallel
Strand 3	G	1114	1119	parallel
Strand 4	G	1086	1091	anti-parallel
Strand 5	G	1097	1099	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1051	1053	first strand
Strand 2	H	1041	1044	anti-parallel
Strand 3	H	1114	1118	parallel
Strand 4	H	1087	1091	anti-parallel
Strand 5	H	1097	1099	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1051	1053	first strand
Strand 2	I	1041	1045	anti-parallel
Strand 3	I	1114	1119	parallel
Strand 4	I	1086	1090	anti-parallel
Strand 5	I	1098	1099	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1051	1053	first strand
Strand 2	J	1041	1044	anti-parallel
Strand 3	J	1114	1119	parallel
Strand 4	J	1086	1091	anti-parallel
Strand 5	J	1097	1099	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1051	1053	first strand
Strand 2	K	1041	1045	anti-parallel
Strand 3	K	1114	1119	parallel
Strand 4	K	1086	1091	anti-parallel
Strand 5	K	1097	1099	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1051	1053	first strand
Strand 2	L	1041	1045	anti-parallel
Strand 3	L	1115	1119	parallel
Strand 4	L	1086	1090	anti-parallel
Strand 5	L	1098	1099	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1051	1053	first strand
Strand 2	M	1041	1045	anti-parallel
Strand 3	M	1114	1118	parallel
Strand 4	M	1087	1091	anti-parallel
Strand 5	M	1098	1099	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1051	1053	first strand
Strand 2	N	1041	1044	anti-parallel
Strand 3	N	1114	1118	parallel
Strand 4	N	1087	1091	anti-parallel
Strand 5	N	1097	1099	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	1051	1053	first strand
Strand 2	O	1041	1045	anti-parallel
Strand 3	O	1114	1118	parallel
Strand 4	O	1087	1091	anti-parallel
Strand 5	O	1098	1099	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1051	1053	first strand
Strand 2	P	1041	1045	anti-parallel
Strand 3	P	1114	1119	parallel
Strand 4	P	1086	1091	anti-parallel
Strand 5	P	1097	1099	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NJ6