Analysis of interatomic Contacts of Structural Units in PDB entry:
4NJ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NJ7 entry

There are 16 chains in PDB entry 4NJ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 1040	VAL 1123
B	TYR 1040	GLN 1124
C	TYR 1040	MSE 1126
D	TYR 1040	VAL 1123
E	TYR 1040	VAL 1123
F	THR 1039	MSE 1126
G	TYR 1040	MSE 1126
H	TYR 1040	MSE 1126
I	TYR 1040	MSE 1126
J	TYR 1040	GLN 1124
K	THR 1039	VAL 1123
L	THR 1039	GLN 1124
M	TYR 1040	VAL 1123
N	THR 1041	MSE 1126
O	TYR 1040	MSE 1126
P	THR 1039	SER 1119

There are 54 helices in PDB entry 4NJ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1054	1058	Right-handed 310
Helix 2	2	A	1060	1072	Right-handed alpha
Helix 3	3	A	1104	1112	Right-handed alpha
Helix 4	4	B	1054	1058	Right-handed 310
Helix 5	5	B	1060	1072	Right-handed alpha
Helix 6	6	B	1104	1112	Right-handed alpha
Helix 7	7	C	1054	1058	Right-handed 310
Helix 8	8	C	1060	1072	Right-handed alpha
Helix 9	9	C	1104	1112	Right-handed alpha
Helix 10	10	C	1119	1125	Right-handed alpha
Helix 11	11	D	1054	1058	Right-handed 310
Helix 12	12	D	1060	1072	Right-handed alpha
Helix 13	13	D	1104	1112	Right-handed alpha
Helix 14	14	E	1054	1058	Right-handed 310
Helix 15	15	E	1060	1072	Right-handed alpha
Helix 16	16	E	1104	1110	Right-handed alpha
Helix 17	17	F	1054	1058	Right-handed 310
Helix 18	18	F	1060	1072	Right-handed alpha
Helix 19	19	F	1104	1110	Right-handed alpha
Helix 20	20	F	1121	1126	Right-handed alpha
Helix 21	21	G	1054	1058	Right-handed 310
Helix 22	22	G	1060	1072	Right-handed alpha
Helix 23	23	G	1104	1112	Right-handed alpha
Helix 24	24	H	1054	1058	Right-handed 310
Helix 25	25	H	1060	1072	Right-handed alpha
Helix 26	26	H	1104	1110	Right-handed alpha
Helix 27	27	H	1119	1124	Right-handed alpha
Helix 28	28	I	1054	1058	Right-handed 310
Helix 29	29	I	1060	1072	Right-handed alpha
Helix 30	30	I	1104	1110	Right-handed alpha
Helix 31	31	I	1119	1124	Right-handed alpha
Helix 32	32	J	1054	1058	Right-handed 310
Helix 33	33	J	1060	1072	Right-handed alpha
Helix 34	34	J	1104	1112	Right-handed alpha
Helix 35	35	J	1119	1123	Right-handed 310
Helix 36	36	K	1054	1058	Right-handed 310
Helix 37	37	K	1060	1072	Right-handed alpha
Helix 38	38	K	1104	1110	Right-handed alpha
Helix 39	39	L	1054	1058	Right-handed 310
Helix 40	40	L	1060	1072	Right-handed alpha
Helix 41	41	L	1104	1110	Right-handed alpha
Helix 42	42	M	1054	1058	Right-handed 310
Helix 43	43	M	1060	1072	Right-handed alpha
Helix 44	44	M	1104	1112	Right-handed alpha
Helix 45	45	N	1054	1058	Right-handed 310
Helix 46	46	N	1062	1072	Right-handed alpha
Helix 47	47	N	1104	1112	Right-handed alpha
Helix 48	48	N	1119	1124	Right-handed alpha
Helix 49	49	O	1054	1058	Right-handed 310
Helix 50	50	O	1060	1072	Right-handed alpha
Helix 51	51	O	1104	1109	Right-handed alpha
Helix 52	52	P	1054	1058	Right-handed 310
Helix 53	53	P	1060	1072	Right-handed alpha
Helix 54	54	P	1104	1112	Right-handed alpha

There are 16 sheets in PDB entry 4NJ7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1051	1053	first strand
Strand 2	A	1041	1045	anti-parallel
Strand 3	A	1114	1118	parallel
Strand 4	A	1087	1091	anti-parallel
Strand 5	A	1097	1099	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1051	1053	first strand
Strand 2	B	1041	1045	anti-parallel
Strand 3	B	1114	1118	parallel
Strand 4	B	1087	1092	anti-parallel
Strand 5	B	1096	1099	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1051	1053	first strand
Strand 2	C	1041	1045	anti-parallel
Strand 3	C	1114	1118	parallel
Strand 4	C	1087	1090	anti-parallel
Strand 5	C	1098	1099	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1051	1053	first strand
Strand 2	D	1041	1045	anti-parallel
Strand 3	D	1114	1118	parallel
Strand 4	D	1087	1090	anti-parallel
Strand 5	D	1098	1099	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1051	1053	first strand
Strand 2	E	1041	1045	anti-parallel
Strand 3	E	1114	1119	parallel
Strand 4	E	1086	1090	anti-parallel
Strand 5	E	1098	1099	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1048	1053	first strand
Strand 2	F	1041	1045	anti-parallel
Strand 3	F	1114	1118	parallel
Strand 4	F	1087	1091	anti-parallel
Strand 5	F	1098	1099	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1051	1053	first strand
Strand 2	G	1041	1045	anti-parallel
Strand 3	G	1114	1118	parallel
Strand 4	G	1087	1091	anti-parallel
Strand 5	G	1097	1099	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1051	1053	first strand
Strand 2	H	1041	1045	anti-parallel
Strand 3	H	1114	1118	parallel
Strand 4	H	1087	1090	anti-parallel
Strand 5	H	1098	1099	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1051	1053	first strand
Strand 2	I	1041	1045	anti-parallel
Strand 3	I	1114	1118	parallel
Strand 4	I	1087	1091	anti-parallel
Strand 5	I	1097	1099	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1051	1053	first strand
Strand 2	J	1041	1045	anti-parallel
Strand 3	J	1114	1118	parallel
Strand 4	J	1087	1090	anti-parallel
Strand 5	J	1098	1099	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1051	1053	first strand
Strand 2	K	1041	1045	anti-parallel
Strand 3	K	1114	1119	parallel
Strand 4	K	1086	1091	anti-parallel
Strand 5	K	1097	1099	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1051	1053	first strand
Strand 2	L	1041	1045	anti-parallel
Strand 3	L	1114	1117	parallel
Strand 4	L	1088	1091	anti-parallel
Strand 5	L	1098	1099	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1051	1053	first strand
Strand 2	M	1041	1045	anti-parallel
Strand 3	M	1114	1118	parallel
Strand 4	M	1087	1090	anti-parallel
Strand 5	M	1098	1099	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1051	1052	first strand
Strand 2	N	1042	1045	anti-parallel
Strand 3	N	1114	1117	parallel
Strand 4	N	1088	1091	anti-parallel
Strand 5	N	1098	1099	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	1051	1053	first strand
Strand 2	O	1041	1045	anti-parallel
Strand 3	O	1114	1118	parallel
Strand 4	O	1087	1090	anti-parallel
Strand 5	O	1098	1099	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1051	1053	first strand
Strand 2	P	1041	1045	anti-parallel
Strand 3	P	1114	1118	parallel
Strand 4	P	1087	1091	anti-parallel
Strand 5	P	1097	1099	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NJ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NJ7