Analysis of interatomic Contacts of Structural Units in PDB entry:
4NJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NJI entry

There are 2 chains in PDB entry 4NJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PRO 210
B
 THR 2PRO 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4NJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
37 42Right-handed alpha
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
99 109Right-handed alpha
Helix 6
6
A
158 163Right-handed alpha
Helix 7
7
A
179 194Right-handed alpha
Helix 8
8
A
202 208Right-handed alpha
Helix 9
9
B
37 42Right-handed alpha
Helix 10
10
B
66 77Right-handed alpha
Helix 11
11
B
93 97Right-handed 310
Helix 12
12
B
99 109Right-handed alpha
Helix 13
13
B
159 165Right-handed 310
Helix 14
14
B
179 194Right-handed alpha
Helix 15
15
B
202 208Right-handed alpha
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There are 2 sheets in PDB entry 4NJI. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
3 12anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
86 90parallel
Strand 5
A
112 117parallel
Strand 6
A
129 132parallel
Strand 7
A
144 152parallel
Strand 8
A
166 174parallel
Strand 9
A
198 199parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
3 12anti-parallel
Strand 3
B
22 28anti-parallel
Strand 4
B
86 90parallel
Strand 5
B
112 117parallel
Strand 6
B
129 132parallel
Strand 7
B
144 152parallel
Strand 8
B
166 174parallel
Strand 9
B
197 199parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il