Analysis of interatomic Contacts of Structural Units in PDB entry:
4NJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NJQ entry

There are 4 chains in PDB entry 4NJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 429
B	MET 1	PRO 429
C	MET 1	PRO 429
D	MET 1	PRO 429

There are 57 helices in PDB entry 4NJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	3	15	Right-handed alpha
Helix 2	2	A	18	33	Right-handed alpha
Helix 3	3	A	70	75	Right-handed alpha
Helix 4	4	A	114	118	Right-handed 310
Helix 5	5	A	154	158	Right-handed 310
Helix 6	6	A	160	164	Right-handed 310
Helix 7	7	A	168	173	Right-handed alpha
Helix 8	8	A	187	201	Right-handed alpha
Helix 9	9	A	234	250	Right-handed alpha
Helix 10	10	A	279	288	Right-handed alpha
Helix 11	11	A	292	299	Right-handed alpha
Helix 12	12	A	313	320	Right-handed 310
Helix 13	13	A	321	325	Right-handed 310
Helix 14	14	A	345	359	Right-handed alpha
Helix 15	15	A	410	424	Right-handed alpha
Helix 16	16	B	2	15	Right-handed alpha
Helix 17	17	B	18	33	Right-handed alpha
Helix 18	18	B	70	75	Right-handed alpha
Helix 19	19	B	114	118	Right-handed 310
Helix 20	20	B	154	158	Right-handed 310
Helix 21	21	B	160	164	Right-handed 310
Helix 22	22	B	168	173	Right-handed alpha
Helix 23	23	B	187	201	Right-handed alpha
Helix 24	24	B	234	251	Right-handed alpha
Helix 25	25	B	279	286	Right-handed alpha
Helix 26	26	B	292	299	Right-handed alpha
Helix 27	27	B	316	320	Right-handed 310
Helix 28	28	B	345	359	Right-handed alpha
Helix 29	29	B	410	425	Right-handed alpha
Helix 30	30	C	2	16	Right-handed alpha
Helix 31	31	C	18	33	Right-handed alpha
Helix 32	32	C	70	75	Right-handed alpha
Helix 33	33	C	114	118	Right-handed 310
Helix 34	34	C	154	158	Right-handed 310
Helix 35	35	C	160	164	Right-handed 310
Helix 36	36	C	168	173	Right-handed alpha
Helix 37	37	C	187	201	Right-handed alpha
Helix 38	38	C	234	251	Right-handed alpha
Helix 39	39	C	279	286	Right-handed alpha
Helix 40	40	C	290	299	Right-handed alpha
Helix 41	41	C	316	320	Right-handed 310
Helix 42	42	C	345	358	Right-handed alpha
Helix 43	43	C	410	424	Right-handed alpha
Helix 44	44	D	2	16	Right-handed alpha
Helix 45	45	D	18	33	Right-handed alpha
Helix 46	46	D	70	75	Right-handed alpha
Helix 47	47	D	114	118	Right-handed 310
Helix 48	48	D	154	158	Right-handed 310
Helix 49	49	D	160	164	Right-handed 310
Helix 50	50	D	168	173	Right-handed alpha
Helix 51	51	D	187	201	Right-handed alpha
Helix 52	52	D	234	251	Right-handed alpha
Helix 53	53	D	279	287	Right-handed alpha
Helix 54	54	D	292	299	Right-handed alpha
Helix 55	55	D	316	320	Right-handed 310
Helix 56	56	D	345	359	Right-handed alpha
Helix 57	57	D	410	424	Right-handed alpha

There are 15 sheets in PDB entry 4NJQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	51	56	parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	257	262	anti-parallel
Strand 5	A	77	82	parallel
Strand 6	A	302	306	parallel
Strand 7	A	390	394	parallel
Strand 8	A	333	335	anti-parallel
Strand 9	A	364	366	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	98	first strand
Strand 2	A	101	109	anti-parallel
Strand 3	A	176	179	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	142	first strand
Strand 2	A	122	132	anti-parallel
Strand 3	A	206	216	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	405	408	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	396	397	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	51	56	parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	256	262	anti-parallel
Strand 5	B	76	82	parallel
Strand 6	B	302	306	parallel
Strand 7	B	390	394	parallel
Strand 8	B	333	335	anti-parallel
Strand 9	B	364	366	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	142	first strand
Strand 2	B	122	132	anti-parallel
Strand 3	B	206	216	anti-parallel
Strand 4	B	87	98	anti-parallel
Strand 5	B	101	109	anti-parallel
Strand 6	B	176	179	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	405	408	anti-parallel
Strand 4	B	396	398	anti-parallel
Strand 5	B	309	310	parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	51	56	parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	257	262	anti-parallel
Strand 5	C	77	82	parallel
Strand 6	C	302	306	parallel
Strand 7	C	390	394	parallel
Strand 8	C	333	335	anti-parallel
Strand 9	C	364	366	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	98	first strand
Strand 2	C	101	109	anti-parallel
Strand 3	C	176	179	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	142	first strand
Strand 2	C	122	131	anti-parallel
Strand 3	C	206	216	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	229	232	anti-parallel
Strand 3	C	405	408	anti-parallel
Strand 4	C	396	398	anti-parallel
Strand 5	C	309	310	parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	51	56	parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	256	262	anti-parallel
Strand 5	D	76	82	parallel
Strand 6	D	302	306	parallel
Strand 7	D	390	394	parallel
Strand 8	D	333	335	anti-parallel
Strand 9	D	364	366	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	142	first strand
Strand 2	D	122	132	anti-parallel
Strand 3	D	206	216	anti-parallel
Strand 4	D	87	98	anti-parallel
Strand 5	D	101	109	anti-parallel
Strand 6	D	176	179	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	223	first strand
Strand 2	D	229	232	anti-parallel
Strand 3	D	405	408	anti-parallel
Strand 4	D	396	398	anti-parallel
Strand 5	D	309	310	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NJQ