Analysis of interatomic Contacts of Structural Units in PDB entry:
4NK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NK5 entry

There are 6 chains in PDB entry 4NK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 258
B
 MET 1SER 258
C
 MET 1SER 258
D
 MET 1SER 258
E
 MET 1SER 258
F
 MET 1ALA 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 4NK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
42 56Right-handed alpha
Helix 3
3
A
68 81Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
109 121Right-handed alpha
Helix 7
7
A
121 133Right-handed alpha
Helix 8
8
A
146 150Right-handed 310
Helix 9
9
A
158 178Right-handed alpha
Helix 10
10
A
196 200Right-handed 310
Helix 11
11
A
202 213Right-handed alpha
Helix 12
12
A
221 234Right-handed alpha
Helix 13
13
A
235 238Right-handed 310
Helix 14
14
A
250 254Right-handed 310
Helix 15
15
B
20 32Right-handed alpha
Helix 16
16
B
42 55Right-handed alpha
Helix 17
17
B
68 81Right-handed alpha
Helix 18
18
B
97 101Right-handed 310
Helix 19
19
B
104 108Right-handed 310
Helix 20
20
B
109 121Right-handed alpha
Helix 21
21
B
121 133Right-handed alpha
Helix 22
22
B
146 150Right-handed 310
Helix 23
23
B
158 178Right-handed alpha
Helix 24
24
B
194 200Right-handed alpha
Helix 25
25
B
202 214Right-handed alpha
Helix 26
26
B
221 234Right-handed alpha
Helix 27
27
B
235 238Right-handed 310
Helix 28
28
B
250 254Right-handed 310
Helix 29
29
C
20 32Right-handed alpha
Helix 30
30
C
42 56Right-handed alpha
Helix 31
31
C
68 80Right-handed alpha
Helix 32
32
C
97 101Right-handed 310
Helix 33
33
C
104 108Right-handed 310
Helix 34
34
C
109 121Right-handed alpha
Helix 35
35
C
121 133Right-handed alpha
Helix 36
36
C
146 150Right-handed 310
Helix 37
37
C
158 179Right-handed alpha
Helix 38
38
C
196 200Right-handed 310
Helix 39
39
C
202 214Right-handed alpha
Helix 40
40
C
221 234Right-handed alpha
Helix 41
41
C
235 238Right-handed 310
Helix 42
42
C
250 254Right-handed 310
Helix 43
43
D
20 32Right-handed alpha
Helix 44
44
D
42 56Right-handed alpha
Helix 45
45
D
68 81Right-handed alpha
Helix 46
46
D
97 101Right-handed 310
Helix 47
47
D
104 108Right-handed 310
Helix 48
48
D
109 121Right-handed alpha
Helix 49
49
D
121 132Right-handed alpha
Helix 50
50
D
133 135Right-handed 310
Helix 51
51
D
146 150Right-handed 310
Helix 52
52
D
158 177Right-handed alpha
Helix 53
53
D
178 180Right-handed 310
Helix 54
54
D
194 200Right-handed alpha
Helix 55
55
D
202 213Right-handed alpha
Helix 56
56
D
221 234Right-handed alpha
Helix 57
57
D
235 238Right-handed 310
Helix 58
58
D
250 254Right-handed 310
Helix 59
59
E
20 31Right-handed alpha
Helix 60
60
E
42 56Right-handed alpha
Helix 61
61
E
68 81Right-handed alpha
Helix 62
62
E
97 101Right-handed 310
Helix 63
63
E
104 108Right-handed 310
Helix 64
64
E
109 121Right-handed alpha
Helix 65
65
E
121 132Right-handed alpha
Helix 66
66
E
133 135Right-handed 310
Helix 67
67
E
146 150Right-handed 310
Helix 68
68
E
158 177Right-handed alpha
Helix 69
69
E
178 180Right-handed 310
Helix 70
70
E
194 199Right-handed alpha
Helix 71
71
E
202 214Right-handed alpha
Helix 72
72
E
221 233Right-handed alpha
Helix 73
73
E
234 238Right-handed 310
Helix 74
74
E
250 254Right-handed 310
Helix 75
75
F
20 32Right-handed alpha
Helix 76
76
F
42 56Right-handed alpha
Helix 77
77
F
68 81Right-handed alpha
Helix 78
78
F
97 101Right-handed 310
Helix 79
79
F
104 108Right-handed 310
Helix 80
80
F
109 121Right-handed alpha
Helix 81
81
F
122 133Right-handed alpha
Helix 82
82
F
146 150Right-handed 310
Helix 83
83
F
158 179Right-handed alpha
Helix 84
84
F
195 200Right-handed alpha
Helix 85
85
F
202 214Right-handed alpha
Helix 86
86
F
221 234Right-handed alpha
Helix 87
87
F
235 238Right-handed 310
Helix 88
88
F
250 254Right-handed 310
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There are 6 sheets in PDB entry 4NK5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
35 40parallel
Strand 3
A
9 13parallel
Strand 4
A
88 91parallel
Strand 5
A
139 145parallel
Strand 6
A
182 189parallel
Strand 7
A
244 247parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
35 40parallel
Strand 3
B
9 13parallel
Strand 4
B
88 91parallel
Strand 5
B
139 145parallel
Strand 6
B
182 189parallel
Strand 7
B
244 247parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 63first strand
Strand 2
C
34 40parallel
Strand 3
C
8 13parallel
Strand 4
C
88 91parallel
Strand 5
C
139 145parallel
Strand 6
C
182 189parallel
Strand 7
C
244 247parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 63first strand
Strand 2
D
34 40parallel
Strand 3
D
8 13parallel
Strand 4
D
88 91parallel
Strand 5
D
139 145parallel
Strand 6
D
182 189parallel
Strand 7
D
244 247parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 63first strand
Strand 2
E
34 40parallel
Strand 3
E
8 13parallel
Strand 4
E
88 91parallel
Strand 5
E
139 145parallel
Strand 6
E
182 189parallel
Strand 7
E
244 247parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
61 63first strand
Strand 2
F
35 40parallel
Strand 3
F
9 13parallel
Strand 4
F
88 91parallel
Strand 5
F
139 145parallel
Strand 6
F
182 189parallel
Strand 7
F
244 247parallel
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