Analysis of interatomic Contacts of Structural Units in PDB entry:
4NKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NKY entry

There are 4 chains in PDB entry 4NKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 31GLN 503
B
 LEU 31GLN 503
C
 LEU 31GLN 503
D
 LEU 31GLN 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 4NKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 61Right-handed alpha
Helix 2
2
A
78 87Right-handed alpha
Helix 3
3
A
99 106Right-handed alpha
Helix 4
4
A
118 132Right-handed alpha
Helix 5
5
A
133 136Right-handed 310
Helix 6
6
A
141 159Right-handed alpha
Helix 7
7
A
167 185Right-handed alpha
Helix 8
8
A
193 210Right-handed alpha
Helix 9
9
A
219 223Right-handed 310
Helix 10
10
A
227 254Right-handed alpha
Helix 11
11
A
261 272Right-handed alpha
Helix 12
12
A
283 287Right-handed 310
Helix 13
13
A
288 321Right-handed alpha
Helix 14
14
A
321 336Right-handed alpha
Helix 15
15
A
343 349Right-handed 310
Helix 16
16
A
350 364Right-handed alpha
Helix 17
17
A
395 402Right-handed alpha
Helix 18
18
A
413 418Right-handed 310
Helix 19
19
A
444 462Right-handed alpha
Helix 20
20
A
496 502Right-handed alpha
Helix 21
21
B
48 56Right-handed alpha
Helix 22
22
B
56 61Right-handed alpha
Helix 23
23
B
78 87Right-handed alpha
Helix 24
24
B
89 94Right-handed 310
Helix 25
25
B
99 106Right-handed alpha
Helix 26
26
B
118 132Right-handed alpha
Helix 27
27
B
133 136Right-handed 310
Helix 28
28
B
141 159Right-handed alpha
Helix 29
29
B
167 185Right-handed alpha
Helix 30
30
B
193 210Right-handed alpha
Helix 31
31
B
219 223Right-handed 310
Helix 32
32
B
227 252Right-handed alpha
Helix 33
33
B
261 272Right-handed alpha
Helix 34
34
B
283 287Right-handed 310
Helix 35
35
B
288 321Right-handed alpha
Helix 36
36
B
321 336Right-handed alpha
Helix 37
37
B
343 349Right-handed 310
Helix 38
38
B
350 364Right-handed alpha
Helix 39
39
B
395 400Right-handed alpha
Helix 40
40
B
413 418Right-handed 310
Helix 41
41
B
444 462Right-handed alpha
Helix 42
42
B
496 502Right-handed alpha
Helix 43
43
C
48 56Right-handed alpha
Helix 44
44
C
56 61Right-handed alpha
Helix 45
45
C
78 87Right-handed alpha
Helix 46
46
C
99 106Right-handed alpha
Helix 47
47
C
118 134Right-handed alpha
Helix 48
48
C
141 159Right-handed alpha
Helix 49
49
C
167 185Right-handed alpha
Helix 50
50
C
193 210Right-handed alpha
Helix 51
51
C
227 252Right-handed alpha
Helix 52
52
C
261 275Right-handed alpha
Helix 53
53
C
284 287Right-handed 310
Helix 54
54
C
288 320Right-handed alpha
Helix 55
55
C
321 336Right-handed alpha
Helix 56
56
C
343 349Right-handed 310
Helix 57
57
C
350 364Right-handed alpha
Helix 58
58
C
395 402Right-handed alpha
Helix 59
59
C
413 418Right-handed 310
Helix 60
60
C
437 441Right-handed 310
Helix 61
61
C
444 462Right-handed alpha
Helix 62
62
C
496 502Right-handed alpha
Helix 63
63
D
48 61Right-handed alpha
Helix 64
64
D
78 87Right-handed alpha
Helix 65
65
D
99 106Right-handed alpha
Helix 66
66
D
118 132Right-handed alpha
Helix 67
67
D
133 136Right-handed 310
Helix 68
68
D
141 159Right-handed alpha
Helix 69
69
D
167 185Right-handed alpha
Helix 70
70
D
192 210Right-handed alpha
Helix 71
71
D
227 251Right-handed alpha
Helix 72
72
D
261 272Right-handed alpha
Helix 73
73
D
283 287Right-handed 310
Helix 74
74
D
288 320Right-handed alpha
Helix 75
75
D
321 336Right-handed alpha
Helix 76
76
D
343 349Right-handed 310
Helix 77
77
D
350 364Right-handed alpha
Helix 78
78
D
395 402Right-handed alpha
Helix 79
79
D
413 418Right-handed 310
Helix 80
80
D
444 462Right-handed alpha
Helix 81
81
D
496 502Right-handed alpha
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There are 16 sheets in PDB entry 4NKY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
D
63 68parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
391 394parallel
Strand 5
D
373 374anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
391 394anti-parallel
Strand 3
A
71 76parallel
Strand 4
A
63 68anti-parallel
Strand 5
D
36 40parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
491 495anti-parallel
Strand 3
A
463 466anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 381first strand
Strand 2
A
384 386anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 480first strand
Strand 2
A
484 485anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
C
63 68parallel
Strand 3
C
71 76anti-parallel
Strand 4
C
391 394parallel
Strand 5
C
373 374anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
391 394anti-parallel
Strand 3
B
71 76parallel
Strand 4
B
63 68anti-parallel
Strand 5
C
36 40parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
491 495anti-parallel
Strand 3
B
463 466anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 381first strand
Strand 2
B
384 386anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 480first strand
Strand 2
B
484 485anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 165first strand
Strand 2
C
491 495anti-parallel
Strand 3
C
463 466anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
379 381first strand
Strand 2
C
384 386anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
479 480first strand
Strand 2
C
484 485anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 165first strand
Strand 2
D
491 495anti-parallel
Strand 3
D
463 466anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
379 381first strand
Strand 2
D
384 386anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
479 480first strand
Strand 2
D
484 485anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il