Analysis of interatomic Contacts of Structural Units in PDB entry:
4NMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NMA entry

There are 2 chains in PDB entry 4NMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 1003
B
 SER 4THR 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 4NMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 21Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
33 45Right-handed alpha
Helix 4
4
A
45 59Right-handed alpha
Helix 5
5
A
60 62Right-handed 310
Helix 6
6
A
64 77Right-handed alpha
Helix 7
7
A
105 118Right-handed alpha
Helix 8
8
A
124 138Right-handed alpha
Helix 9
9
A
153 175Right-handed alpha
Helix 10
10
A
176 178Right-handed 310
Helix 11
11
A
190 194Right-handed 310
Helix 12
12
A
203 207Right-handed 310
Helix 13
13
A
212 214Right-handed 310
Helix 14
14
A
215 237Right-handed alpha
Helix 15
15
A
247 249Right-handed 310
Helix 16
16
A
250 265Right-handed alpha
Helix 17
17
A
281 297Right-handed alpha
Helix 18
18
A
309 320Right-handed alpha
Helix 19
19
A
329 347Right-handed alpha
Helix 20
20
A
359 373Right-handed alpha
Helix 21
21
A
376 378Right-handed 310
Helix 22
22
A
389 400Right-handed alpha
Helix 23
23
A
415 428Right-handed alpha
Helix 24
24
A
431 438Right-handed alpha
Helix 25
25
A
442 447Right-handed alpha
Helix 26
26
A
449 462Right-handed alpha
Helix 27
27
A
488 504Right-handed alpha
Helix 28
28
A
544 564Right-handed alpha
Helix 29
29
A
566 583Right-handed alpha
Helix 30
30
A
584 597Right-handed alpha
Helix 31
31
A
599 625Right-handed alpha
Helix 32
32
A
658 671Right-handed alpha
Helix 33
33
A
680 682Right-handed 310
Helix 34
34
A
683 698Right-handed alpha
Helix 35
35
A
710 721Right-handed alpha
Helix 36
36
A
732 744Right-handed alpha
Helix 37
37
A
773 787Right-handed alpha
Helix 38
38
A
788 791Right-handed 310
Helix 39
39
A
805 818Right-handed alpha
Helix 40
40
A
837 855Right-handed alpha
Helix 41
41
A
883 887Right-handed 310
Helix 42
42
A
902 911Right-handed alpha
Helix 43
43
A
925 936Right-handed alpha
Helix 44
44
A
973 977Right-handed 310
Helix 45
45
B
5 22Right-handed alpha
Helix 46
46
B
26 30Right-handed 310
Helix 47
47
B
33 45Right-handed alpha
Helix 48
48
B
45 59Right-handed alpha
Helix 49
49
B
60 62Right-handed 310
Helix 50
50
B
64 77Right-handed alpha
Helix 51
51
B
78 82Right-handed 310
Helix 52
52
B
103 118Right-handed alpha
Helix 53
53
B
124 138Right-handed alpha
Helix 54
54
B
153 176Right-handed alpha
Helix 55
55
B
190 194Right-handed 310
Helix 56
56
B
203 207Right-handed 310
Helix 57
57
B
212 214Right-handed 310
Helix 58
58
B
215 237Right-handed alpha
Helix 59
59
B
247 249Right-handed 310
Helix 60
60
B
250 265Right-handed alpha
Helix 61
61
B
281 297Right-handed alpha
Helix 62
62
B
309 320Right-handed alpha
Helix 63
63
B
329 347Right-handed alpha
Helix 64
64
B
359 373Right-handed alpha
Helix 65
65
B
376 378Right-handed 310
Helix 66
66
B
389 400Right-handed alpha
Helix 67
67
B
415 428Right-handed alpha
Helix 68
68
B
431 438Right-handed alpha
Helix 69
69
B
442 448Right-handed alpha
Helix 70
70
B
449 462Right-handed alpha
Helix 71
71
B
488 504Right-handed alpha
Helix 72
72
B
544 564Right-handed alpha
Helix 73
73
B
566 583Right-handed alpha
Helix 74
74
B
584 597Right-handed alpha
Helix 75
75
B
599 626Right-handed alpha
Helix 76
76
B
658 671Right-handed alpha
Helix 77
77
B
680 682Right-handed 310
Helix 78
78
B
683 698Right-handed alpha
Helix 79
79
B
710 721Right-handed alpha
Helix 80
80
B
732 744Right-handed alpha
Helix 81
81
B
773 787Right-handed alpha
Helix 82
82
B
788 791Right-handed 310
Helix 83
83
B
805 818Right-handed alpha
Helix 84
84
B
837 855Right-handed alpha
Helix 85
85
B
883 887Right-handed 310
Helix 86
86
B
902 911Right-handed alpha
Helix 87
87
B
925 936Right-handed alpha
Helix 88
88
B
974 977Right-handed 310
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There are 11 sheets in PDB entry 4NMA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 146first strand
Strand 2
A
199 202parallel
Strand 3
A
240 243parallel
Strand 4
A
271 276parallel
Strand 5
A
300 305parallel
Strand 6
A
351 356parallel
Strand 7
A
380 385parallel
Strand 8
A
403 409parallel
Strand 9
A
141 146parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
532 541parallel
Strand 3
A
524 529anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
517 519anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 630first strand
Strand 2
A
636 644anti-parallel
Strand 3
A
979 987anti-parallel
Strand 4
B
940 943parallel
Strand 5
B
918 922parallel
Strand 6
B
764 768parallel
Strand 7
B
796 802parallel
Strand 8
B
894 900parallel
Strand 9
B
874 877parallel
Strand 10
B
856 860anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 706first strand
Strand 2
A
674 678parallel
Strand 3
A
647 651parallel
Strand 4
A
724 730parallel
Strand 5
A
755 759parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
856 860first strand
Strand 2
A
874 877anti-parallel
Strand 3
A
894 900parallel
Strand 4
A
796 802parallel
Strand 5
A
764 768parallel
Strand 6
A
918 922parallel
Strand 7
A
940 943parallel
Strand 8
B
979 987parallel
Strand 9
B
636 644anti-parallel
Strand 10
B
628 629anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 146first strand
Strand 2
B
199 202parallel
Strand 3
B
240 243parallel
Strand 4
B
271 276parallel
Strand 5
B
300 305parallel
Strand 6
B
351 356parallel
Strand 7
B
380 385parallel
Strand 8
B
403 409parallel
Strand 9
B
141 146parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
508 510first strand
Strand 2
B
532 541parallel
Strand 3
B
524 529anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
512 514first strand
Strand 2
B
517 519anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
704 706first strand
Strand 2
B
674 678parallel
Strand 3
B
647 651parallel
Strand 4
B
724 730parallel
Strand 5
B
755 759parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
915 916first strand
Strand 2
B
960 961anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il