Analysis of interatomic Contacts of Structural Units in PDB entry:
4NMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NMJ entry

There are 8 chains in PDB entry 4NMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 6	LYS 491
B	MET 7	LYS 491
C	LYS 8	LYS 491
D	VAL 9	LYS 491
E	MET 7	LYS 491
F	ILE 2	LEU 490
G	MET 7	LEU 490
H	LYS 8	LYS 491

There are149 helices in PDB entry 4NMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	65	Right-handed alpha
Helix 2	2	A	66	84	Right-handed alpha
Helix 3	3	A	84	97	Right-handed alpha
Helix 4	4	A	99	121	Right-handed alpha
Helix 5	5	A	122	124	Right-handed 310
Helix 6	6	A	156	171	Right-handed alpha
Helix 7	7	A	183	197	Right-handed alpha
Helix 8	8	A	213	221	Right-handed alpha
Helix 9	9	A	232	244	Right-handed alpha
Helix 10	10	A	245	247	Right-handed 310
Helix 11	11	A	267	281	Right-handed alpha
Helix 12	12	A	282	285	Right-handed 310
Helix 13	13	A	297	313	Right-handed alpha
Helix 14	14	A	332	349	Right-handed alpha
Helix 15	15	A	376	381	Right-handed alpha
Helix 16	16	A	395	405	Right-handed alpha
Helix 17	17	A	418	429	Right-handed alpha
Helix 18	18	A	452	454	Right-handed 310
Helix 19	19	A	462	469	Right-handed alpha
Helix 20	20	B	44	65	Right-handed alpha
Helix 21	21	B	66	97	Right-handed alpha
Helix 22	22	B	99	121	Right-handed alpha
Helix 23	23	B	122	124	Right-handed 310
Helix 24	24	B	156	171	Right-handed alpha
Helix 25	25	B	183	198	Right-handed alpha
Helix 26	26	B	210	221	Right-handed alpha
Helix 27	27	B	232	244	Right-handed alpha
Helix 28	28	B	245	247	Right-handed 310
Helix 29	29	B	267	281	Right-handed alpha
Helix 30	30	B	282	285	Right-handed 310
Helix 31	31	B	297	313	Right-handed alpha
Helix 32	32	B	332	349	Right-handed alpha
Helix 33	33	B	376	381	Right-handed alpha
Helix 34	34	B	395	405	Right-handed alpha
Helix 35	35	B	418	429	Right-handed alpha
Helix 36	36	B	452	454	Right-handed 310
Helix 37	37	B	462	469	Right-handed alpha
Helix 38	38	C	44	65	Right-handed alpha
Helix 39	39	C	66	84	Right-handed alpha
Helix 40	40	C	84	97	Right-handed alpha
Helix 41	41	C	99	121	Right-handed alpha
Helix 42	42	C	122	124	Right-handed 310
Helix 43	43	C	156	171	Right-handed alpha
Helix 44	44	C	183	197	Right-handed alpha
Helix 45	45	C	213	221	Right-handed alpha
Helix 46	46	C	232	244	Right-handed alpha
Helix 47	47	C	245	247	Right-handed 310
Helix 48	48	C	267	281	Right-handed alpha
Helix 49	49	C	282	285	Right-handed 310
Helix 50	50	C	297	313	Right-handed alpha
Helix 51	51	C	332	349	Right-handed alpha
Helix 52	52	C	376	381	Right-handed alpha
Helix 53	53	C	395	405	Right-handed alpha
Helix 54	54	C	418	429	Right-handed alpha
Helix 55	55	C	452	454	Right-handed 310
Helix 56	56	C	461	469	Right-handed alpha
Helix 57	57	D	44	65	Right-handed alpha
Helix 58	58	D	66	84	Right-handed alpha
Helix 59	59	D	84	97	Right-handed alpha
Helix 60	60	D	99	121	Right-handed alpha
Helix 61	61	D	156	171	Right-handed alpha
Helix 62	62	D	183	198	Right-handed alpha
Helix 63	63	D	213	221	Right-handed alpha
Helix 64	64	D	232	244	Right-handed alpha
Helix 65	65	D	245	247	Right-handed 310
Helix 66	66	D	267	281	Right-handed alpha
Helix 67	67	D	282	285	Right-handed 310
Helix 68	68	D	297	313	Right-handed alpha
Helix 69	69	D	332	349	Right-handed alpha
Helix 70	70	D	376	381	Right-handed alpha
Helix 71	71	D	395	405	Right-handed alpha
Helix 72	72	D	418	429	Right-handed alpha
Helix 73	73	D	452	454	Right-handed 310
Helix 74	74	D	461	469	Right-handed alpha
Helix 75	75	E	44	65	Right-handed alpha
Helix 76	76	E	66	84	Right-handed alpha
Helix 77	77	E	84	95	Right-handed alpha
Helix 78	78	E	99	121	Right-handed alpha
Helix 79	79	E	122	124	Right-handed 310
Helix 80	80	E	156	171	Right-handed alpha
Helix 81	81	E	183	198	Right-handed alpha
Helix 82	82	E	213	221	Right-handed alpha
Helix 83	83	E	232	244	Right-handed alpha
Helix 84	84	E	245	247	Right-handed 310
Helix 85	85	E	267	281	Right-handed alpha
Helix 86	86	E	282	285	Right-handed 310
Helix 87	87	E	297	312	Right-handed alpha
Helix 88	88	E	332	349	Right-handed alpha
Helix 89	89	E	376	381	Right-handed alpha
Helix 90	90	E	395	405	Right-handed alpha
Helix 91	91	E	418	429	Right-handed alpha
Helix 92	92	E	452	454	Right-handed 310
Helix 93	93	E	462	469	Right-handed alpha
Helix 94	94	F	3	7	Right-handed 310
Helix 95	95	F	44	65	Right-handed alpha
Helix 96	96	F	66	95	Right-handed alpha
Helix 97	97	F	99	121	Right-handed alpha
Helix 98	98	F	122	124	Right-handed 310
Helix 99	99	F	156	171	Right-handed alpha
Helix 100	100	F	183	198	Right-handed alpha
Helix 101	101	F	213	221	Right-handed alpha
Helix 102	102	F	232	244	Right-handed alpha
Helix 103	103	F	245	247	Right-handed 310
Helix 104	104	F	267	281	Right-handed alpha
Helix 105	105	F	282	285	Right-handed 310
Helix 106	106	F	299	313	Right-handed alpha
Helix 107	107	F	332	349	Right-handed alpha
Helix 108	108	F	376	381	Right-handed alpha
Helix 109	109	F	395	405	Right-handed alpha
Helix 110	110	F	418	429	Right-handed alpha
Helix 111	111	F	452	454	Right-handed 310
Helix 112	112	F	462	469	Right-handed alpha
Helix 113	113	G	44	65	Right-handed alpha
Helix 114	114	G	66	84	Right-handed alpha
Helix 115	115	G	84	97	Right-handed alpha
Helix 116	116	G	99	121	Right-handed alpha
Helix 117	117	G	122	124	Right-handed 310
Helix 118	118	G	156	171	Right-handed alpha
Helix 119	119	G	183	197	Right-handed alpha
Helix 120	120	G	213	221	Right-handed alpha
Helix 121	121	G	232	244	Right-handed alpha
Helix 122	122	G	245	247	Right-handed 310
Helix 123	123	G	267	281	Right-handed alpha
Helix 124	124	G	282	285	Right-handed 310
Helix 125	125	G	297	313	Right-handed alpha
Helix 126	126	G	332	349	Right-handed alpha
Helix 127	127	G	376	381	Right-handed alpha
Helix 128	128	G	395	405	Right-handed alpha
Helix 129	129	G	418	429	Right-handed alpha
Helix 130	130	G	452	454	Right-handed 310
Helix 131	131	G	461	469	Right-handed alpha
Helix 132	132	H	44	65	Right-handed alpha
Helix 133	133	H	66	97	Right-handed alpha
Helix 134	134	H	99	121	Right-handed alpha
Helix 135	135	H	122	124	Right-handed 310
Helix 136	136	H	156	171	Right-handed alpha
Helix 137	137	H	183	198	Right-handed alpha
Helix 138	138	H	213	221	Right-handed alpha
Helix 139	139	H	232	244	Right-handed alpha
Helix 140	140	H	245	247	Right-handed 310
Helix 141	141	H	267	281	Right-handed alpha
Helix 142	142	H	282	285	Right-handed 310
Helix 143	143	H	297	313	Right-handed alpha
Helix 144	144	H	332	349	Right-handed alpha
Helix 145	145	H	376	381	Right-handed alpha
Helix 146	146	H	395	405	Right-handed alpha
Helix 147	147	H	418	429	Right-handed alpha
Helix 148	148	H	452	454	Right-handed 310
Helix 149	149	H	461	469	Right-handed alpha

There are 36 sheets in PDB entry 4NMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	16	18	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	36	41	anti-parallel

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There are 20 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	367	370	anti-parallel
Strand 3	B	387	393	parallel
Strand 4	B	290	296	parallel
Strand 5	B	258	262	parallel
Strand 6	B	413	415	parallel
Strand 7	B	433	436	parallel
Strand 8	A	470	478	parallel
Strand 9	A	136	144	anti-parallel
Strand 10	A	126	129	anti-parallel
Strand 11	D	126	128	anti-parallel
Strand 12	D	136	144	anti-parallel
Strand 13	D	470	478	anti-parallel
Strand 14	C	433	436	parallel
Strand 15	C	413	415	parallel
Strand 16	C	258	262	parallel
Strand 17	C	290	296	parallel
Strand 18	C	387	393	parallel
Strand 19	C	367	370	parallel
Strand 20	C	352	355	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	174	178	parallel
Strand 3	A	147	151	parallel
Strand 4	A	224	230	parallel
Strand 5	A	249	253	parallel
Strand 6	A	456	457	anti-parallel

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There are 20 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	367	370	anti-parallel
Strand 3	A	387	393	parallel
Strand 4	A	290	296	parallel
Strand 5	A	258	262	parallel
Strand 6	A	413	415	parallel
Strand 7	A	433	436	parallel
Strand 8	B	470	478	parallel
Strand 9	B	136	144	anti-parallel
Strand 10	B	126	128	anti-parallel
Strand 11	C	126	129	anti-parallel
Strand 12	C	136	144	anti-parallel
Strand 13	C	470	478	anti-parallel
Strand 14	D	433	436	parallel
Strand 15	D	413	415	parallel
Strand 16	D	258	262	parallel
Strand 17	D	290	296	parallel
Strand 18	D	387	393	parallel
Strand 19	D	367	370	parallel
Strand 20	D	352	355	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	363	364	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	16	18	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	36	41	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	174	178	parallel
Strand 3	B	147	151	parallel
Strand 4	B	224	230	parallel
Strand 5	B	249	253	parallel
Strand 6	B	456	457	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	363	364	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	16	18	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	29	first strand
Strand 2	C	36	41	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	174	178	parallel
Strand 3	C	147	151	parallel
Strand 4	C	224	230	parallel
Strand 5	C	249	253	parallel
Strand 6	C	456	457	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	360	first strand
Strand 2	C	363	364	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	16	18	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	36	41	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	174	178	parallel
Strand 3	D	147	151	parallel
Strand 4	D	224	230	parallel
Strand 5	D	249	253	parallel
Strand 6	D	456	457	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	360	first strand
Strand 2	D	363	364	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	16	18	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	29	first strand
Strand 2	E	36	41	anti-parallel

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There are 20 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	355	first strand
Strand 2	F	367	370	anti-parallel
Strand 3	F	387	393	parallel
Strand 4	F	290	296	parallel
Strand 5	F	258	262	parallel
Strand 6	F	413	415	parallel
Strand 7	F	433	436	parallel
Strand 8	E	470	478	parallel
Strand 9	E	136	144	anti-parallel
Strand 10	E	126	129	anti-parallel
Strand 11	H	126	129	anti-parallel
Strand 12	H	136	144	anti-parallel
Strand 13	H	470	478	anti-parallel
Strand 14	G	433	436	parallel
Strand 15	G	413	415	parallel
Strand 16	G	258	262	parallel
Strand 17	G	290	296	parallel
Strand 18	G	387	393	parallel
Strand 19	G	367	370	parallel
Strand 20	G	352	355	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	206	first strand
Strand 2	E	174	178	parallel
Strand 3	E	147	151	parallel
Strand 4	E	224	230	parallel
Strand 5	E	249	253	parallel
Strand 6	E	456	457	anti-parallel

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There are 20 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	352	355	first strand
Strand 2	E	367	370	anti-parallel
Strand 3	E	387	393	parallel
Strand 4	E	290	296	parallel
Strand 5	E	258	262	parallel
Strand 6	E	413	415	parallel
Strand 7	E	433	436	parallel
Strand 8	F	470	478	parallel
Strand 9	F	136	144	anti-parallel
Strand 10	F	126	128	anti-parallel
Strand 11	G	126	129	anti-parallel
Strand 12	G	136	144	anti-parallel
Strand 13	G	470	478	anti-parallel
Strand 14	H	433	436	parallel
Strand 15	H	413	415	parallel
Strand 16	H	258	262	parallel
Strand 17	H	290	296	parallel
Strand 18	H	387	393	parallel
Strand 19	H	367	370	parallel
Strand 20	H	352	355	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	360	first strand
Strand 2	E	363	364	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	16	18	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	29	first strand
Strand 2	F	36	41	anti-parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	206	first strand
Strand 2	F	174	178	parallel
Strand 3	F	147	151	parallel
Strand 4	F	224	230	parallel
Strand 5	F	249	253	parallel
Strand 6	F	456	457	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	360	first strand
Strand 2	F	363	364	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	16	18	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	29	first strand
Strand 2	G	36	41	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	206	first strand
Strand 2	G	174	178	parallel
Strand 3	G	147	151	parallel
Strand 4	G	224	230	parallel
Strand 5	G	249	253	parallel
Strand 6	G	456	457	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	359	360	first strand
Strand 2	G	363	364	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	16	18	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	29	first strand
Strand 2	H	36	41	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	206	first strand
Strand 2	H	174	178	parallel
Strand 3	H	147	151	parallel
Strand 4	H	224	230	parallel
Strand 5	H	249	253	parallel
Strand 6	H	456	457	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	359	360	first strand
Strand 2	H	363	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NMJ