Analysis of interatomic Contacts of Structural Units in PDB entry:
4NML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NML entry

There are 2 chains in PDB entry 4NML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASP 81
A
 LEU 83GLU 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4NML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 20Right-handed alpha
Helix 2
2
A
31 47Right-handed alpha
Helix 3
3
A
59 68Right-handed alpha
Helix 4
4
A
75 79Right-handed 310
Helix 5
5
A
107 117Right-handed alpha
Helix 6
6
A
128 130Right-handed 310
Helix 7
7
A
149 160Right-handed alpha
Helix 8
8
A
160 166Right-handed alpha
Helix 9
9
A
191 195Right-handed 310
Helix 10
10
A
215 225Right-handed alpha
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There are 3 sheets in PDB entry 4NML. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
25 28parallel
Strand 3
A
83 88parallel
Strand 4
A
118 126parallel
Strand 5
A
241 245parallel
Strand 6
A
251 255anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
99 101anti-parallel
Strand 3
A
234 235anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
229 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il