Analysis of interatomic Contacts of Structural Units in PDB entry:
4NMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NMN entry

There are 2 chains in PDB entry 4NMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8GLU 439
B
 PRO 8LEU 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4NMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
26 35Right-handed alpha
Helix 3
3
A
42 60Right-handed alpha
Helix 4
4
A
64 76Right-handed alpha
Helix 5
5
A
84 92Right-handed alpha
Helix 6
6
A
95 128Right-handed alpha
Helix 7
7
A
131 149Right-handed alpha
Helix 8
8
A
157 174Right-handed alpha
Helix 9
9
A
186 194Right-handed alpha
Helix 10
10
A
211 227Right-handed alpha
Helix 11
11
A
239 253Right-handed alpha
Helix 12
12
A
255 262Right-handed alpha
Helix 13
13
A
265 282Right-handed alpha
Helix 14
14
A
293 308Right-handed alpha
Helix 15
15
A
317 321Right-handed 310
Helix 16
16
A
329 349Right-handed alpha
Helix 17
17
A
359 363Right-handed 310
Helix 18
18
A
371 377Right-handed alpha
Helix 19
19
A
378 379Right-handed 310
Helix 20
20
A
380 385Right-handed 310
Helix 21
21
A
393 398Right-handed alpha
Helix 22
22
B
10 24Right-handed alpha
Helix 23
23
B
26 35Right-handed alpha
Helix 24
24
B
36 40Right-handed 310
Helix 25
25
B
42 56Right-handed alpha
Helix 26
26
B
65 75Right-handed alpha
Helix 27
27
B
83 92Right-handed alpha
Helix 28
28
B
95 128Right-handed alpha
Helix 29
29
B
131 150Right-handed alpha
Helix 30
30
B
158 174Right-handed alpha
Helix 31
31
B
186 193Right-handed alpha
Helix 32
32
B
211 227Right-handed alpha
Helix 33
33
B
239 253Right-handed alpha
Helix 34
34
B
255 262Right-handed alpha
Helix 35
35
B
265 282Right-handed alpha
Helix 36
36
B
293 308Right-handed alpha
Helix 37
37
B
317 321Right-handed 310
Helix 38
38
B
330 349Right-handed alpha
Helix 39
39
B
371 377Right-handed alpha
Helix 40
40
B
393 398Right-handed alpha
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There are 2 sheets in PDB entry 4NMN. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
422 429anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
387 392anti-parallel
Strand 5
A
201 206parallel
Strand 6
A
352 357parallel
Strand 7
A
312 316parallel
Strand 8
A
231 235parallel
Strand 9
A
284 287parallel
Strand 10
B
156 157anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
231 235parallel
Strand 3
B
312 316parallel
Strand 4
B
352 357parallel
Strand 5
B
201 206parallel
Strand 6
B
387 392parallel
Strand 7
B
408 416anti-parallel
Strand 8
B
422 429anti-parallel
Strand 9
B
434 436anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il