Analysis of interatomic Contacts of Structural Units in PDB entry:
4NMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NMW entry

There is 1 chain in PDB entry 4NMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LEU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 4NMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 31Right-handed 310
Helix 2
2
A
32 38Right-handed alpha
Helix 3
3
A
60 70Right-handed alpha
Helix 4
4
A
82 95Right-handed alpha
Helix 5
5
A
121 133Right-handed alpha
Helix 6
6
A
135 146Right-handed alpha
Helix 7
7
A
153 167Right-handed alpha
Helix 8
8
A
172 186Right-handed alpha
Helix 9
9
A
190 195Right-handed 310
Helix 10
10
A
213 222Right-handed alpha
Helix 11
11
A
236 241Right-handed alpha
Helix 12
12
A
241 255Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4NMW.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
15 19parallel
Strand 4
A
76 81parallel
Strand 5
A
99 105parallel
Strand 6
A
199 204parallel
Strand 7
A
226 230parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il