Analysis of interatomic Contacts of Structural Units in PDB entry:
4NMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NMY entry

There are 2 chains in PDB entry 4NMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLN 301
B
 SER 3GLN 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 4NMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 17Right-handed 310
Helix 2
2
A
18 27Right-handed alpha
Helix 3
3
A
28 33Right-handed alpha
Helix 4
4
A
46 53Right-handed alpha
Helix 5
5
A
62 72Right-handed alpha
Helix 6
6
A
97 99Right-handed 310
Helix 7
7
A
102 107Right-handed 310
Helix 8
8
A
116 130Right-handed alpha
Helix 9
9
A
133 137Right-handed 310
Helix 10
10
A
146 151Right-handed alpha
Helix 11
11
A
163 172Right-handed alpha
Helix 12
12
A
180 184Right-handed alpha
Helix 13
13
A
185 188Right-handed 310
Helix 14
14
A
198 204Right-handed alpha
Helix 15
15
A
204 225Right-handed alpha
Helix 16
16
A
225 237Right-handed alpha
Helix 17
17
A
241 254Right-handed alpha
Helix 18
18
A
267 281Right-handed alpha
Helix 19
19
A
289 294Right-handed alpha
Helix 20
20
B
15 17Right-handed 310
Helix 21
21
B
18 27Right-handed alpha
Helix 22
22
B
28 33Right-handed alpha
Helix 23
23
B
46 53Right-handed alpha
Helix 24
24
B
62 72Right-handed alpha
Helix 25
25
B
97 99Right-handed 310
Helix 26
26
B
102 107Right-handed 310
Helix 27
27
B
116 130Right-handed alpha
Helix 28
28
B
133 137Right-handed 310
Helix 29
29
B
146 151Right-handed alpha
Helix 30
30
B
163 172Right-handed alpha
Helix 31
31
B
180 184Right-handed alpha
Helix 32
32
B
185 188Right-handed 310
Helix 33
33
B
198 204Right-handed alpha
Helix 34
34
B
204 225Right-handed alpha
Helix 35
35
B
225 237Right-handed alpha
Helix 36
36
B
241 254Right-handed alpha
Helix 37
37
B
267 281Right-handed alpha
Helix 38
38
B
289 294Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4NMY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
4 9parallel
Strand 3
A
58 61parallel
Strand 4
A
193 197anti-parallel
Strand 5
A
78 83anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
175 179anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
138 141parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
4 9parallel
Strand 3
B
58 61parallel
Strand 4
B
193 197anti-parallel
Strand 5
B
78 83anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 141first strand
Strand 2
B
110 113parallel
Strand 3
B
156 160parallel
Strand 4
B
90 95anti-parallel
Strand 5
B
175 179anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il