Analysis of interatomic Contacts of Structural Units in PDB entry:
4NN6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NN6 entry

There are 3 chains in PDB entry 4NN6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 22PRO 139
B
 ASP 37PRO 232
C
 THR 30SER 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4NN6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 37Right-handed alpha
Helix 2
2
A
37 47Right-handed alpha
Helix 3
3
A
59 73Right-handed alpha
Helix 4
4
A
80 83Right-handed 310
Helix 5
5
A
84 98Right-handed alpha
Helix 6
6
A
118 138Right-handed alpha
Helix 7
7
B
122 126Right-handed 310
Helix 8
8
B
152 157Right-handed 310
Helix 9
9
B
193 195Right-handed 310
Helix 10
10
C
110 113Right-handed 310
Helix 11
11
C
191 196Right-handed alpha
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There are 9 sheets in PDB entry 4NN6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
53 59anti-parallel
Strand 3
B
91 96anti-parallel
Strand 4
B
86 88anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
70 74anti-parallel
Strand 3
B
105 111anti-parallel
Strand 4
B
114 121anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
216 217parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 140first strand
Strand 2
B
145 151anti-parallel
Strand 3
B
187 191anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
163 171anti-parallel
Strand 3
B
200 209anti-parallel
Strand 4
B
225 228anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
81 85anti-parallel
Strand 3
C
38 42anti-parallel
Strand 4
C
31 34anti-parallel
Strand 5
C
115 116parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
57 60anti-parallel
Strand 3
C
92 96anti-parallel
Strand 4
C
105 109anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 127first strand
Strand 2
C
133 136anti-parallel
Strand 3
C
170 173anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 167first strand
Strand 2
C
145 153anti-parallel
Strand 3
C
182 190anti-parallel
Strand 4
C
208 210anti-parallel
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