Analysis of interatomic Contacts of Structural Units in PDB entry:
4NNJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4NNJ entry

There is 1 chain in PDB entry 4NNJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 11	LYS 652

There are102 helices in PDB entry 4NNJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	27	Right-handed alpha
Helix 2	2	A	27	35	Right-handed alpha
Helix 3	3	A	45	59	Right-handed alpha
Helix 4	4	A	72	78	Right-handed 310
Helix 5	5	A	83	87	Right-handed 310
Helix 6	6	A	90	101	Right-handed alpha
Helix 7	7	A	116	123	Right-handed 310
Helix 8	8	A	133	148	Right-handed alpha
Helix 9	9	A	219	224	Right-handed 310
Helix 10	10	A	243	247	Right-handed 310
Helix 11	11	A	268	275	Right-handed alpha
Helix 12	12	A	282	286	Right-handed 310
Helix 13	13	A	287	306	Right-handed alpha
Helix 14	14	A	315	333	Right-handed alpha
Helix 15	15	A	344	354	Right-handed alpha
Helix 16	16	A	359	380	Right-handed alpha
Helix 17	17	A	394	397	Right-handed 310
Helix 18	18	A	417	425	Right-handed alpha
Helix 19	19	A	425	434	Right-handed alpha
Helix 20	20	A	443	457	Right-handed alpha
Helix 21	21	A	475	481	Right-handed 310
Helix 22	22	A	486	490	Right-handed 310
Helix 23	23	A	493	506	Right-handed alpha
Helix 24	24	A	507	510	Right-handed 310
Helix 25	25	A	521	525	Right-handed 310
Helix 26	26	A	529	535	Right-handed alpha
Helix 27	27	A	545	560	Right-handed alpha
Helix 28	28	A	585	589	Right-handed 310
Helix 29	29	A	598	604	Right-handed alpha
Helix 30	30	A	608	625	Right-handed alpha
Helix 31	31	A	625	637	Right-handed alpha
Helix 32	32	A	639	648	Right-handed alpha
Helix 33	33	A	650	664	Right-handed alpha
Helix 34	34	A	668	685	Right-handed alpha
Helix 35	35	A	685	695	Right-handed alpha
Helix 36	36	A	724	743	Right-handed alpha
Helix 37	37	A	754	764	Right-handed alpha
Helix 38	38	A	797	803	Right-handed alpha
Helix 39	39	A	807	812	Right-handed 310
Helix 40	40	A	829	845	Right-handed alpha
Helix 41	41	A	851	860	Right-handed alpha
Helix 42	42	A	866	886	Right-handed alpha
Helix 43	43	A	890	894	Right-handed 310
Helix 44	44	A	938	951	Right-handed alpha
Helix 45	45	A	970	978	Right-handed alpha
Helix 46	46	A	981	991	Right-handed alpha
Helix 47	47	B	22	35	Right-handed alpha
Helix 48	48	B	37	41	Right-handed 310
Helix 49	49	B	56	60	Right-handed 310
Helix 50	50	C	15	27	Right-handed alpha
Helix 51	51	C	27	35	Right-handed alpha
Helix 52	52	C	45	59	Right-handed alpha
Helix 53	53	C	72	78	Right-handed 310
Helix 54	54	C	83	87	Right-handed 310
Helix 55	55	C	90	102	Right-handed alpha
Helix 56	56	C	116	123	Right-handed 310
Helix 57	57	C	133	147	Right-handed alpha
Helix 58	58	C	219	224	Right-handed 310
Helix 59	59	C	243	247	Right-handed 310
Helix 60	60	C	268	275	Right-handed alpha
Helix 61	61	C	282	286	Right-handed 310
Helix 62	62	C	287	306	Right-handed alpha
Helix 63	63	C	315	333	Right-handed alpha
Helix 64	64	C	344	354	Right-handed alpha
Helix 65	65	C	359	380	Right-handed alpha
Helix 66	66	C	394	397	Right-handed 310
Helix 67	67	C	406	411	Right-handed alpha
Helix 68	68	C	417	425	Right-handed alpha
Helix 69	69	C	425	434	Right-handed alpha
Helix 70	70	C	443	457	Right-handed alpha
Helix 71	71	C	475	481	Right-handed 310
Helix 72	72	C	486	490	Right-handed 310
Helix 73	73	C	493	506	Right-handed alpha
Helix 74	74	C	507	510	Right-handed 310
Helix 75	75	C	521	525	Right-handed 310
Helix 76	76	C	529	535	Right-handed alpha
Helix 77	77	C	545	560	Right-handed alpha
Helix 78	78	C	585	589	Right-handed 310
Helix 79	79	C	598	604	Right-handed alpha
Helix 80	80	C	608	625	Right-handed alpha
Helix 81	81	C	625	635	Right-handed alpha
Helix 82	82	C	639	648	Right-handed alpha
Helix 83	83	C	650	664	Right-handed alpha
Helix 84	84	C	668	685	Right-handed alpha
Helix 85	85	C	685	695	Right-handed alpha
Helix 86	86	C	724	742	Right-handed alpha
Helix 87	87	C	754	765	Right-handed alpha
Helix 88	88	C	797	805	Right-handed alpha
Helix 89	89	C	807	812	Right-handed 310
Helix 90	90	C	829	845	Right-handed alpha
Helix 91	91	C	851	861	Right-handed alpha
Helix 92	92	C	866	886	Right-handed alpha
Helix 93	93	C	890	894	Right-handed 310
Helix 94	94	C	938	951	Right-handed alpha
Helix 95	95	C	970	978	Right-handed alpha
Helix 96	96	C	981	991	Right-handed alpha
Helix 97	97	D	22	35	Right-handed alpha
Helix 98	98	D	37	41	Right-handed 310
Helix 99	99	D	56	60	Right-handed 310
Helix 100	100	E	22	35	Right-handed alpha
Helix 101	101	E	37	39	Right-handed 310
Helix 102	102	E	56	60	Right-handed 310

There are 17 sheets in PDB entry 4NNJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	62	66	parallel
Strand 3	A	38	42	parallel
Strand 4	A	125	128	parallel
Strand 5	A	150	157	parallel
Strand 6	A	160	166	anti-parallel
Strand 7	A	388	392	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	262	264	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	210	214	anti-parallel
Strand 3	A	254	258	anti-parallel
Strand 4	A	183	189	anti-parallel
Strand 5	A	194	197	anti-parallel
Strand 6	A	237	239	anti-parallel
Strand 7	A	231	234	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	516	first strand
Strand 2	A	465	469	parallel
Strand 3	A	436	440	parallel
Strand 4	A	538	541	parallel
Strand 5	A	563	569	parallel
Strand 6	A	572	578	anti-parallel
Strand 7	A	896	900	anti-parallel
Strand 8	A	905	909	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	916	919	first strand
Strand 2	A	922	925	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	930	934	first strand
Strand 2	A	1019	1023	parallel
Strand 3	A	1000	1008	anti-parallel
Strand 4	A	953	959	anti-parallel
Strand 5	A	962	966	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	930	934	first strand
Strand 2	A	1019	1023	parallel
Strand 3	A	1000	1008	anti-parallel
Strand 4	A	1014	1015	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	18	first strand
Strand 2	B	0	7	anti-parallel
Strand 3	B	66	70	parallel
Strand 4	B	42	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	62	66	parallel
Strand 3	C	38	42	parallel
Strand 4	C	125	128	parallel
Strand 5	C	150	157	parallel
Strand 6	C	160	166	anti-parallel
Strand 7	C	388	392	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	262	264	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	229	first strand
Strand 2	C	210	214	anti-parallel
Strand 3	C	254	257	anti-parallel
Strand 4	C	183	189	anti-parallel
Strand 5	C	194	197	anti-parallel
Strand 6	C	237	239	anti-parallel
Strand 7	C	231	234	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	516	first strand
Strand 2	C	465	469	parallel
Strand 3	C	436	440	parallel
Strand 4	C	538	541	parallel
Strand 5	C	563	569	parallel
Strand 6	C	572	578	anti-parallel
Strand 7	C	896	900	anti-parallel
Strand 8	C	905	909	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	916	919	first strand
Strand 2	C	922	925	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	930	934	first strand
Strand 2	C	1019	1023	parallel
Strand 3	C	1000	1008	anti-parallel
Strand 4	C	953	959	anti-parallel
Strand 5	C	962	966	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	930	934	first strand
Strand 2	C	1019	1023	parallel
Strand 3	C	1000	1008	anti-parallel
Strand 4	C	1014	1015	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	17	first strand
Strand 2	D	1	7	anti-parallel
Strand 3	D	66	69	parallel
Strand 4	D	43	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	17	first strand
Strand 2	E	1	6	anti-parallel
Strand 3	E	66	71	parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4NNJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4NNJ