Analysis of interatomic Contacts of Structural Units in PDB entry:
4NOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NOD entry

There are 16 chains in PDB entry 4NOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 44ARG 233
B
 SER 44ARG 233
C
 T 1 G 18
C
 T 20 G 22
E
 T 1 G 18
E
 T 20 G 22
D
 C 1 A 22
F
 C 1 A 22
G
 SER 44ARG 233
H
 SER 44ARG 233
I
 T 1 G 18
I
 T 20 G 22
K
 T 1 G 18
K
 T 20 G 22
J
 C 1 A 22
L
 C 1 A 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4NOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 72Right-handed alpha
Helix 2
2
A
76 91Right-handed alpha
Helix 3
3
A
92 120Right-handed alpha
Helix 4
4
A
122 152Right-handed alpha
Helix 5
5
A
160 167Right-handed alpha
Helix 6
6
A
177 192Right-handed alpha
Helix 7
7
A
193 196Right-handed 310
Helix 8
8
A
197 225Right-handed alpha
Helix 9
9
A
227 231Right-handed 310
Helix 10
10
B
55 72Right-handed alpha
Helix 11
11
B
76 91Right-handed alpha
Helix 12
12
B
92 120Right-handed alpha
Helix 13
13
B
122 152Right-handed alpha
Helix 14
14
B
160 167Right-handed alpha
Helix 15
15
B
177 192Right-handed alpha
Helix 16
16
B
193 196Right-handed 310
Helix 17
17
B
197 225Right-handed alpha
Helix 18
18
B
227 231Right-handed 310
Helix 19
19
G
55 72Right-handed alpha
Helix 20
20
G
76 91Right-handed alpha
Helix 21
21
G
92 120Right-handed alpha
Helix 22
22
G
122 152Right-handed alpha
Helix 23
23
G
160 167Right-handed alpha
Helix 24
24
G
177 192Right-handed alpha
Helix 25
25
G
193 196Right-handed 310
Helix 26
26
G
197 226Right-handed alpha
Helix 27
27
G
227 231Right-handed 310
Helix 28
28
H
55 72Right-handed alpha
Helix 29
29
H
76 91Right-handed alpha
Helix 30
30
H
92 120Right-handed alpha
Helix 31
31
H
122 152Right-handed alpha
Helix 32
32
H
160 167Right-handed alpha
Helix 33
33
H
177 192Right-handed alpha
Helix 34
34
H
193 196Right-handed 310
Helix 35
35
H
197 225Right-handed alpha
Helix 36
36
H
227 231Right-handed 310
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There are no sheets in PDB entry 4NOD
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